Query= MSMg01no357_m18.b1 MSMg01no357_m18.b1 CHROMAT_FILE:
MSMg01no357_m18.b1 PHD_FILE: MSMg01no357_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:53 2005
(514 letters)
>mm_chr3_74099321_74100234
Length = 914
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaaattgtattttaatatacaaagtcacaggataagatagtgcctttaatttt 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ggaattccaatttgtattttaatatacaaagtcacaggataagatagtgcctttaatttt 655
Query: 64 gaacaactatgatccttgtctaccagtgataaaagttaattttatgattcaatagaa-at 122
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 654 gaacaaatatgatccttgtctaccagtgataaaagttaattttatgattcaatagaaga- 596
Query: 123 tcctaagttagaatggaaatttgaatacaatactacatccagtgctagtacagttttgca 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 595 tcctaagttagaatggaaatttgaatacaatattacatccagtgctagtacagttttgca 536
Query: 183 tagctgcatatggataaaatcaccatagtcattgtagtgaaatgtgctgtatattcagaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tagctgcatatggataaaatcaccatagtcattgtagtgaaatgtgctgtatattcagaa 476
Query: 243 aggtaactctagtattagctagaattatccaatatgtataatttatatatctctctgaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aggtaactctagtattagctagaattatccaatatgtataatttatatatctctctgaac 416
Query: 303 aatatatttcatatgttatatatactctatttagtgttagaaattatgactataatctca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aatatatttcatatgttatatatactctatttagtgttagaaattatgactataatctca 356
Query: 363 tgagattacaacctaattccagaaattaatatgtctctttgcttttgtgcataattattc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 355 tgagattacaacctaattccagaaattaatatgtctctttgcttttgtgcataatcattc 296
Query: 423 ttgttcatactagatggtctttcagtttcttctgtctgaatcattatgttctttcaaaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgttcatactagatggtctttcagtttcttctgtctgaatcattatgttctttcaaaca 236
Query: 483 taagtattttcaccatactccgaaacttcctt 514
||||||||||||||||||||| ||||||||||
Sbjct: 235 taagtattttcaccatactccaaaacttcctt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_m18.g1 MSMg01no357_m18.g1 CHROMAT_FILE:
MSMg01no357_m18.g1 PHD_FILE: MSMg01no357_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:53 2005
(447 letters)
>mm_chr3_73926137_73926983
Length = 847
Score = 833 bits (431), Expect = 0.0
Identities = 443/447 (99%)
Strand = Plus / Plus
Query: 1 attagcaataaacttctagaagatcatcattttccattctttttcatattttaatacaag 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attagcaataaacttctagaagatcatcattttctattctttttcatattttaatacaag 260
Query: 61 attttatgtggttctctgaggaggtagttaatactcatctcagttttttacacagttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttatgtggttctctgaggaggtagttaatactcatctcagttttttacacagttagt 320
Query: 121 gttgtcaaattgcataacattaaataaatattcatttacgaaaactaaggctcctgaata 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gttgtcaaattgcataacattaaataaatattcatttacaaaaactaaggctcctgaata 380
Query: 181 ccttcttacaaattagtgtcatataatcaaaagaagaaatttgctgaaaatattcaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttcttacaaattagtgtcatataatcaaaagaagaaatttgctgaaaatattcaaatg 440
Query: 241 acatattcacttcataggaatatcacaaatggaagactcataacactaccctgagtttta 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acatattcacttcataggaatatcacaaatggaagactcataacactatcctgagtttta 500
Query: 301 aggctgcaatacaagaggttggagaaatatttctgctcttaaatatcgtgtttgttcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctgcaatacaagaggttggagaaatatttctgctcttaaatatcgtgtttgttcttc 560
Query: 361 ctgataatcaggggtcaactcctaactcatagctatctgtaactctagttctagggaatt 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgataatcaggggtcaattcctaactcatagctatctgtaactctagttctagggaatt 620
Query: 421 tggttcccttgtctgcacattgtgggc 447
|||||||||||||||||||||||||||
Sbjct: 621 tggttcccttgtctgcacattgtgggc 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
