NGGGGCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTCTTCTTTCTCCTAAGGGGATCTGGGGTGACTATCTA
CTTCAAGTTCCCACAACCTCCCTTGACTTCTCCACTATGATTGATTGGAA
TGTGGAATTCTGAGCTAAAATAAACCCTTTCTCCCCTAACTTTTCTTTTG
TCGAGGGTGTGTTATCAGAGCAACAGGAAATGGAACTTGGACAAGGTATC
AGACTATATTGTTCTCAAGAAGAAATGAATTGATACAATGACTTTGTGGT
TGTGCAATAAATGTTTCTATTTCTGTTTTATTTTATGAGTATAGTGATAG
TAAAGCCAGTAGTGTTAAAAATCGTTACATCTGGAGAGCTCTTACATCAA
GGGCAGATAAGAAGGCCTGTATGTTCTCTCATTAAATAAAAGTAGCCTGC
CTTTCCAGGGTTGTCTTTATGTATTTAAAAAGAAAATACTTTCTGCTTGT
AATCTCTGACTCAGGAGGCTGGGTTAGAAAGGTCATGAGTTTGAGTTCTG
ACTCGGCTACCCCATGAGATCGAGTCTGGAAATAATTAAAACCAATCCCA
TTTTGTGCTCCATAGCAAGGTAAAAACGCCTCTTACGTTTTCACAGTAAA
ACATTCTCCTACTCCTTCTCTTACCCCTTCCCATTTCCTTCTCATACTCT
TTCCCTATTTTTTTCTTCTCCCATTCTCCTTTCTT

TTTTTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACCCATTCCCAAGGGAATTCACACAAAATGGACTCAC
TGATAAGTGGATATTACCCCAAAACCTAAAATACCCCTCATTATGAATAC
ATTTTCTTAACCATTGGTAACTCCCTAAAAN

Query= MSMg01no357_n09.b1 MSMg01no357_n09.b1 CHROMAT_FILE:
MSMg01no357_n09.b1 PHD_FILE: MSMg01no357_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:56 2005
         (463 letters)



>mm_chr3_148938519_148939385
          Length = 867

 Score =  866 bits (448), Expect = 0.0
 Identities = 458/464 (98%), Gaps = 6/464 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcttctttctcctaaggggatctggggtgactatctacttcaagttcccaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttctttctcctaaggggatctggggtgactatctacttcaagttcccaca 264

                                                                       
Query: 65  acctcccttgacttctccactatgattgattggaatgtggaattctgagctaaaataaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctcccttgacttctccactatgattgattggaatgtggaattctgagctaaaataaac 324

                                                                       
Query: 125 cctttctcccctaacttttcttttgtcgagggtgtgttatcagagcaacaggaaatggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctttctcccctaacttttcttttgtcgagggtgtgttatcagagcaacaggaaatggaa 384

                                                                       
Query: 185 cttggacaaggtatcagactatattgttctcaagaagaaatgaattgatacaatgacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttggacaaggtatcagactatattgttctcaagaagaaatgaattgatacaatgacttt 444

                                                                       
Query: 245 gtggttgtgcaataaatgtttctatttctgttttattttatgagtatagtgatagtaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggttgtgcaataaatgtttctatttctgttttattttatgagtatagtgatagtaaag 504

                                                                       
Query: 305 ccagtagtgttaaaaatcgttacatctggagagc-----tcttacatcaagggcagataa 359
           ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 505 ccagtagtgttaaaaatcgttacatctggagagccatgctcttacatcaagggcagataa 564

                                                                       
Query: 360 gaaggcctgtatgttctctcattaaataaaagtagcctgcctttccagggttgtctttat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaggcctgtatgttctctcattaaataaaagtagcctgcctttccagggttgtctttat 624

                                                       
Query: 420 gtatttaaaaagaaaatactttctgcttgtaatctctgactcag 463
           ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 gtatttaaaaagaaaatactt-ctgcttgtaatctctgactcag 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 867
Length adjustment: 10
Effective length of query: 453
Effective length of database: 857
Effective search space:   388221
Effective search space used:   388221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)