Query= MSMg01no357_n21.b1 MSMg01no357_n21.b1 CHROMAT_FILE:
MSMg01no357_n21.b1 PHD_FILE: MSMg01no357_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:59 2005
(510 letters)
>mm_chr3_109653889_109654796
Length = 908
Score = 876 bits (453), Expect = 0.0
Identities = 496/517 (95%), Gaps = 13/517 (2%)
Strand = Plus / Minus
Query: 5 gaattcataaaggctcacctaaatagagaatcagttacatagctgaacacttcacatcta 64
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 575 gaattcataaaggc-cacctaaatagagaatcagttacatagttgaacacttcacatcta 517
Query: 65 tatagactattctgattaattgtatatactaaccagtaaaagatggcactctctccatag 124
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 516 tatagactattctgattagttgtatatagtaaccagtaaaagatggcactctctccatag 457
Query: 125 gatgggtttctaatgtatctgagagaagcaaagaaggggtctccatgagtgccttgggtg 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatgggtttctaatgaatctgagagaagcaaagaaggggtctccatgagtgccttgggtg 397
Query: 185 tgctcattgaaattcaaggaaaatactatgaatattgggaggaaatcttttaatgcagta 244
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 396 tgctcattgaaattcaaggaaaataccatgaatattaggaggaaatcttttaatgcatta 337
Query: 245 aaatgtaggttttgtgaaggcctgaaagatgttatgaactttaatcatcctaaggaatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaatgtaggttttgtgaaggcctgaaagatgttatgaactttaatcatcctaaggaatta 277
Query: 305 gatacagtcagcttgctcaatgcccatccctctctcctaatttacagtggtccattcatt 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 276 gatacagtcagcttgctcaatgccca-ccctctctcctaatttacagtggtccattcatt 218
Query: 365 atggagt-----------cctttggtaagaaaggggtattcatacaaagtataggactag 413
||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 217 atggagtcctttgctttccctttggtaaggaaggggtattcatacaaagtataggactag 158
Query: 414 gactaaaaatccctaaagaaatctcttagtagctatccaatcaattaaagagaaactttc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gactaaaaatccctaaagaaatctcttagtagctatccaatcaattaaagagaaactttc 98
Query: 474 cctctactctctggataatcctttccaacatccctgc 510
|||||||||||||||||||||||||||||||||||||
Sbjct: 97 cctctactctctggataatcctttccaacatccctgc 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 908
Length adjustment: 10
Effective length of query: 500
Effective length of database: 898
Effective search space: 449000
Effective search space used: 449000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_n21.g1 MSMg01no357_n21.g1 CHROMAT_FILE:
MSMg01no357_n21.g1 PHD_FILE: MSMg01no357_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:59 2005
(425 letters)
>mm_chr3_109506069_109506893
Length = 825
Score = 752 bits (389), Expect = 0.0
Identities = 416/425 (97%)
Strand = Plus / Plus
Query: 1 agcatcaaggaatttctctggaaacatattcatggatgtatacaaacacagagccacgaa 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agcatcaaggaatttccctggaaacatattcatggatgtatacaaacacagagccatgaa 260
Query: 61 agtgttcattgcaaggacacctgtcagcctgaaaactcaggatgaacctaaacatccatc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agtgttcattgcaaggacacctgtcagcctgaaaacgcaggatgaacctaaacatccatc 320
Query: 121 agagaagcacctttggagtaaactttgtcacagccactgccttaaatacctgttggctga 180
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 agagaagtagctttggagtaaactttgtcacagccactgccttaaatacctgttggccga 380
Query: 181 tcactagccactatttcccactttcgcgttcttaaaagaatctgcctttagttctctaag 240
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 381 tcactagccactattttccactttctcattcttaaaagaatctgcctttagttctctaag 440
Query: 241 acacttttaattcatctattgctggctgtccaaattagtggcaaagttttaatgaagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacttttaattcatctattgctggctgtccaaattagtggcaaagttttaatgaagttc 500
Query: 301 taataaaaatacatatctagtaaatatttgttgttgaatgaataaatatataaggacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataaaaatacatatctagtaaatatttgttgttgaatgaataaatatataaggacatt 560
Query: 361 gacataaaaactatatacctgttaagaaatatgtttgttcagattatgtacagacttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacataaaaactatatacctgttaagaaatatgtttgttcagattatgtacagacttttc 620
Query: 421 ttctt 425
|||||
Sbjct: 621 ttctt 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
