BAC Information

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BAC

Clone NameMSMg01-358B11
Chromosome3 (Build37)
Map Location 126,112,399 - 126,112,889
singlet/doubletsinglet
Overlap geneArsj
Upstream geneNdst4, Ugt8a
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358B11.T7 (MSMg01no358_b11.b1)MSMg01-358B11.TJ (MSMg01no358_b11.g1)
ACCAG467831AG467832
length733800
length of high quality
(start - end)		509 (36 - 544)128 (64 - 191)
definitionCHROMAT_FILE: MSMg01no358_b11.b1 PHD_FILE: MSMg01no358_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:16 2005CHROMAT_FILE: MSMg01no358_b11.g1 PHD_FILE: MSMg01no358_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAAT
CACCACTTTTTTGAAGGCATAAAAATTACAATTTATAGTACTTCATTTCC
TAATCACTGATATATTTTTTTTCCTGCAAAAAATCCAAACCTATTGAGAC
TTCTAATCTGTCTACTGTACCTACCTGTTCTACCATTGCTGTCCCTTTTG
TCTCCTTGTTGAGTCTCCATGTATGAGCAGTTTTTTTTTTCTTTCCCATT
ATCACCATGTCATACTCTTTTGGTAAACTCCAATTCTGTCTCTGTCCAGA
GGTTGCAAAGTCATTCCCAGAGGAAAATCTAAAATGACCCACACTCATTG
CTCTGGCTTTAATGTAGCCTGGAAATTTTCCTGCAATGTAATTTACCAGT
GTGATAGCATTAAGCAGTGGGGTTCTCCTATAAAAGACATTAGGGAGAAT
TTTCTAGACCCTTTCCTTTTTTATGCCATAAAAGGAAAAACGAAAAGACA
GTATATTTTGCTGCAGAGAGCAATGTTTACTTGATGCTAACCCTGATGGT
GCATATCCAGTCTCCAGAACTATAAGAAACGCATTTCTATGATTTACTAA
TCACGTAGTTTTAGACTCATCATCTATCAGTCTAAGCAGACAGATCACTG
ATCTCATCTTAAAGTATGGGCACTTTCCTGCCGTAACCCCTTATTTGCTG
GCTCCCCTCTTACTGGGCTTTCCCTTCTCATTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTAGATAAATCCACTTAGAGAAAGAAGGAAAGTGCAT
TCAGACTTGAAAAGATGGAAGGAAGGAATGGAGTGATAGAGGAAGTAAGC
AGGGGAGGAAAGAAGGAAGGAATGGAGGGAGGAAGGGAGGACCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCTCCCCNCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCNCCCC
NNCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCTTCCCCTTTCNNC
NCCCCTCCCCCCCCCCCCCCCTTCCCCCTTCTCCCTCCCTCTTTCCCTCC
CTCCCCTCCCTTTTCCTTCTTTTTCCCCCCCCCTCCCCCCCCCCCCCCTT
CCCCCTTTTTCCCCCCCTCTCCCTCCCCTTTTCCTCCCCCCCCCCCTCCC
CCTTTCCCCCTCCTCTCTCCTTCTCTCCCCCCCCCTTTCTCCCTCCTCCC
TCCTTCCCCCCCCCTCTCCTCTCTTTCCTCTTCCTCCTTTCTTCCCTTCT
CCCTCCCCCTTTCCNTCTTTCTCCTTTCCTTCCTCTCCTCCCTTTTTCCT
TCTTCCCCCNTCCTCCCTCCTTTCCCTTCTTTTCCCTCTTCCCCTCCTTC
CCCCCTTTTTCCCCCTTTCCCCTTCCCCCTTCCCTTTCCTTTCTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_b11.b1 MSMg01no358_b11.b1 CHROMAT_FILE:
MSMg01no358_b11.b1 PHD_FILE: MSMg01no358_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:16 2005
         (509 letters)



>mm_chr3_126112192_126113089
          Length = 898

 Score =  828 bits (428), Expect = 0.0
 Identities = 481/502 (95%), Gaps = 11/502 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcaaaatcaccacttttttgaaggcataaaaattacaatttatagtacttcatttccta 67
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 698 ttcaaaatcaccac-tttttgaaggcataaaaattacaatttgtagtacttcatttccta 640

                                                                       
Query: 68  atcactgatatattttttttcctgcaaaaaatccaaacctattgagacttctaatctgtc 127
           |||||||||||| |||||||||||| |||||||  |||||||||||||||||||||||||
Sbjct: 639 atcactgatata-tttttttcctgc-aaaaatctgaacctattgagacttctaatctgtc 582

                                                                       
Query: 128 tactgtacctacctgttctaccattgctgtcccttttgtctccttgttgagtctccatgt 187
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 581 tactgtacctacctgttctaccattgctgtcctttttgtctccttgttgagtctccatgt 522

                                                                       
Query: 188 atgagcagttttttttttctttcccattatcaccatgtcatactcttttggtaaactcca 247
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atgagcag-tttttttttctttcccattatcaccatgtcatactcttttggtaaactcca 463

                                                                       
Query: 248 attctgtctctgtccagaggttgcaaagtcattcccagaggaaaatctaaaatgacccac 307
           |||||||||      |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 462 attctgtct------agaggttgcaaagtcattcccagaggaaaatctaaagtgacccac 409

                                                                       
Query: 308 actcattgctctggctttaatgtagcctggaaattttcctgcaatgtaatttaccagtgt 367
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 408 actcattgctctggcttgaatgtagcctggaaattttcctgcaatgtaa-ttaccagtgt 350

                                                                       
Query: 368 gatagcattaagcagtggggttctcctataaaagacattagggagaattttctagaccct 427
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 349 gatagcattaagcggtggggttctcctataaaagacattagggagaattttctagactct 290

                                                                       
Query: 428 ttccttttttatgccataaaaggaaaaacgaaaagacagtatattttgctgcagagagca 487
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttccttttttctgccataaaaggaaaaacgaaaagacagtatattttgctgcagagagca 230

                                 
Query: 488 atgtttacttgatgctaaccct 509
           |||||||| |||||||||||||
Sbjct: 229 atgtttacctgatgctaaccct 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 898
Length adjustment: 10
Effective length of query: 499
Effective length of database: 888
Effective search space:   443112
Effective search space used:   443112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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