BAC Information

Click to search

BAC

Clone NameMSMg01-358C21
Chromosome3 (Build37)
Map Location 91,891,060 - 91,891,461
singlet/doubletsinglet
Overlap genenone
Upstream gene9130204L05Rik, LOC100042463, Pglyrp3, EG619750, Lor
Downstream geneA030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358C21.T7 (MSMg01no358_c21.b1)MSMg01-358C21.TJ (MSMg01no358_c21.g1)
ACCAG467897AG467898
length754729
length of high quality
(start - end)		411 (65 - 475)465 (66 - 530)
definitionCHROMAT_FILE: MSMg01no358_c21.b1 PHD_FILE: MSMg01no358_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:23 2005CHROMAT_FILE: MSMg01no358_c21.g1 PHD_FILE: MSMg01no358_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AAACCTTGTTACACTCAAGTGCAATCGACTCCAACTGACTAACAATTCAA
AATGTCTAAGAACTACATTTAGTTTTAATTTATGTACTTTTATGGATTAT
AGTATGATAGTTCTTTCATTTTTAATTGGCAGTTTAATGTACTTCATAAT
GAATTTTTGTCATGTTAACACTCATTCACCACCTTGGGCTTTTCCTGGTT
TTCTTCTTCCTAAGAGTTGCCTCCTATTTTTACATCTTCTTTTTGTGTGT
GGTAAACTGGGATGGATTCTTTTTTGTTGTTTTAGCATGCTTTATTTATT
TCACTATATCCAAATAGTAACACAAATACATGCAATAAATATAAAAATGT
TAATGAGACATTTTGCATTCATTTTCTCCTATTTGGTTTTTGAAACCAAT
GTATATTATCCTAATGGCACATCTTAATTAAGACCAGCCATATGTCAAGT
GGGATCACTATTGAGACCCTCATAATAATACCTTTTGTTGTCCATGCCAT
GGTCCCTTAATGGAAAAACATCTGGTTTGAATCCTAACCAAACTCCGCTT
TTCTATTCTTACATAACGGACTTTTCCCCATACATAATTTTCTCCCTGTA
TTCTTACACAAACTCACCTCCCCAAAAATATTGTTTTTCGTTATACTCTT
GTCTCATAAACCCCTTTTTACATATATCATTTTATCTACTAATTTAGTGG
GGTG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGCTATTGCTTCAGTGGTCTGTCACCTGCTATC
TCTGCTCTGCAATCATGAATTCAAACAATCTGGAAGCATAAGCCTCAAAT
AAATTCTTTCCCCTATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAGAATATA
TCTCTTAATAATATATGGCATGTGAAAAAAACTAATATGTAATAACTGTA
GACAAAAATGGTATATTATTGAATTTAGCTAGGAAGAGGAAATCAAATAG
TACTTGATTTCAATTATATTTCATCTTAGGAAGTTGATCTCACAGAGGTT
TATACAATGATGTTGGTTTCCATGGGAACATTATGGGTGAGAGAAGGATG
TGGAAAAGTTTCTGAACTAAGCTTCAATCAATTCAAGCATGAGTTCAATG
AAGTATTCTATATTTTAAAATATCTACCCAATATAATTTTGTTTTCACCA
TAAAAGATGATAATGTTCCAGGCATGAAATGTTAATCTGGATCATGGTAC
CCCCCCTTATATATATATATTGAAATACATTAAAAGGGAAAGAAAACCCC
CCTTTAAAGGAATTTGTATTTTATAAAAAACTTATCTCATGGAGTTACGA
AATAGAAGTGGGCGAACCCCGGGGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_c21.b1 MSMg01no358_c21.b1 CHROMAT_FILE:
MSMg01no358_c21.b1 PHD_FILE: MSMg01no358_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:23 2005
         (411 letters)



>mm_chr3_91890860_91891669
          Length = 810

 Score =  690 bits (357), Expect = 0.0
 Identities = 394/411 (95%), Gaps = 9/411 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagtgcaatcgactccaactgactaacaattcaaaatgtctaagaactacatttagtt 60
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagtgcagtcgactccaaatgactaacaattcaaaatgtctaagaactacatttagtt 260

                                                                       
Query: 61  ttaatttatgtacttttatggattatagtatgatagttctttcatttttaattggcagtt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaattgatgtacttttatggattatagtatgatagttctttcatttttaattggcagtt 320

                                                                       
Query: 121 taatgtacttcataatgaatttttgtcatgttaacactcattcaccaccttgggcttttc 180
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 taatgtacttcataatgaatatttgt-atgttaacactcattcaccaccttgggcttttc 379

                                                                       
Query: 181 ctggttttcttcttcctaagagttgcctcctatttttacatcttctttttgtgtgtggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctggttttcttcttcctaagagttgcctcctatttttacatcttctttttgtgtgtggta 439

                                                                       
Query: 241 aactgggatggattcttttttgttgttttagcatgctttatttatttcactatatccaaa 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 440 aactgggatggattcttttttgttgttttagtatgctttatttatttcactatattcaaa 499

                                                                       
Query: 301 tagtaacacaaatacatgcaataaatataaaaatgttaatgagacattttgcattcattt 360
           ||        |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 ta--------aatacatgcaataaatataaaaatgttactgagacattttgcattcattt 551

                                                              
Query: 361 tctcctatttggtttttgaaaccaatgtatattatcctaatggcacatctt 411
           |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 tctcctatttggtttttgaaaccaatgtatattatcctgatggcacatctt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 810
Length adjustment: 9
Effective length of query: 402
Effective length of database: 801
Effective search space:   322002
Effective search space used:   322002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |