Query= MSMg01no358_f05.b1 MSMg01no358_f05.b1 CHROMAT_FILE:
MSMg01no358_f05.b1 PHD_FILE: MSMg01no358_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:33 2005
(534 letters)
>mm_chr3_15945171_15946104
Length = 934
Score = 940 bits (486), Expect = 0.0
Identities = 519/530 (97%)
Strand = Plus / Plus
Query: 5 gaattctttggttagctttgtaccccactttttaatagggttatttgattctctgaagtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggttagctttgtaccccactttttaatagggttatttgattctctgaagtc 264
Query: 65 tactttcttgagttctttgtatatattggatattagccctctatcatatgtaggattggt 124
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 265 tactttattgagttctttgtatatattggatattggccctctatcatatgtgggattggt 324
Query: 125 aaagatcttttcccaatctgttggttgctgttttgtccaattgacagtgtcatttgcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatcttttcccaatctgttggttgctgttttgtccaattgacagtgtcatttgcctt 384
Query: 185 acaggagctttgcaattttatgagattccattagacaaagaatccttgaatcataatact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaggagctttgcaattttatgagattccattagacaaagaatccttgaatcataatact 444
Query: 245 cttctttcaaatgtctttaatactgcttactgggttcagtaggttcccctggagaagttc 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 cttctttcaaatgtctttaatactgctaactgggttcagtaggttcccctggagaagttc 504
Query: 305 caggttcttgtttcctgtagtgggaaactggacagagattggtgggtggaaacagaagca 364
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 505 caggttcttgtttcctgtagtgggaaactggacaaagactggtgggtggaaacagaagca 564
Query: 365 ggaacatgattaaaacaagttccatttccaaggctagaagcatgttggaacacgagaagg 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaacatgattaaaacaagatccatttccaaggctagaagcatgttggaacacgagaagg 624
Query: 425 caaagctgtaggaagggtcttacgtcctgtgttgtttatgtagtgcaatcttccttacat 484
|||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct: 625 caaagctgtaggaagggtcttaagtcctgagctgtttatgtagtgcaatcttccttacat 684
Query: 485 gtgtatgtgcagtatgtgctgtttatgtcattacatcttacagcttcctc 534
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 gtgtatgtgcagtatgtgctggttatgtcattacatcttacagcttcctc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f05.g1 MSMg01no358_f05.g1 CHROMAT_FILE:
MSMg01no358_f05.g1 PHD_FILE: MSMg01no358_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:33 2005
(455 letters)
>mm_chr3_16051583_16052436
Length = 854
Score = 727 bits (376), Expect = 0.0
Identities = 424/448 (94%), Gaps = 16/448 (3%)
Strand = Plus / Minus
Query: 1 ctctgtcagtttactgtgaaaggctttagcaagctggttgaatctttagccctccatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctctgtcagtttactgtgaaaggctttagcaagctggttgaatctttagccctccatatg 376
Query: 61 tggtaggaaatctgacaaggaagattgtcttaacatcatgctgctattcagacaacaccc 120
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 tggtaggaagtatgacaaggaagactgtcttaacatcatgctgctattcagacaacaccc 316
Query: 121 caaagcataaggttcttcagtgctgaaactgactctatgccatgcataagcattgctgaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaagcataaggttctttagtgctgaaactgactctatgccatgcataagcattgctgaa 256
Query: 181 gatatttcattacaagagaatattgctcaacttaattttcttcttcttctttttctcgtg 240
|||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 255 gataattcattacaagagaatattgctcaacttaattttcttctgctt-tttttct--tg 199
Query: 241 gatttgtttttgtttttgttgttatt---ttttcatttcttcatgactgtttttggaatt 297
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 198 gatttatttttgtttttgttgttattattttttcatttcttcatgactgtttttggaatt 139
Query: 298 ttggtttttgcttttgtttaagattttgttatttttgttattttttgttatttcttttat 357
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 138 ttggtttttgcttttgtttaagattttgttatttttgttattt----------cttttat 89
Query: 358 atttgccattattttaatagtttgctaaggatatactctgtatatactgacagacatttt 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 88 atttgccattattttaatagtttgctaaggatatactctgtatgtactgacagacatttt 29
Query: 418 aaatccacattgattaaatggatgtatt 445
||||||||||||||||||||||||||||
Sbjct: 28 aaatccacattgattaaatggatgtatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
