Query= MSMg01no358_f06.b1 MSMg01no358_f06.b1 CHROMAT_FILE:
MSMg01no358_f06.b1 PHD_FILE: MSMg01no358_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:34 2005
(531 letters)
>mm_chr3_24978550_24979480
Length = 931
Score = 978 bits (506), Expect = 0.0
Identities = 524/534 (98%), Gaps = 7/534 (1%)
Strand = Plus / Minus
Query: 5 gaattccatgctaattttgatataaagctaactttgagagttactcttttagagaaactg 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 602 gaattccatgctaattttgatataaaactaactttgagagttactcttttagagaaactg 543
Query: 65 aagagacaaacccaagcccacttaaactgaggtgttcagttttttacatgaattctattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagagacaaacccaagcccacttaaactgaggtgttcagttttttacatgaattctattc 483
Query: 125 aagaggattaccagtttgtgcaaagaacccagtgtaaagacctgctagctgaataggtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 aagaggattaccagtttgtgcaaagaacccagtgtaaagacctgctagctgaagaggtaa 423
Query: 185 aacaaaaggtcctgacagacaagattttgtcttacattattttgctacctgtttgctttg 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 422 aacaaaaggtcctgacagacaagattttgtcttaaattattttgctacctgtttgctttg 363
Query: 245 ttttgagaaatgttatttgacctagcagagtgaagcttcattagtaagataacctaccat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttttgagaaatgttatttgacctagcagagtgaagcttcattagtaagataacctaccat 303
Query: 305 ttactgacaatttaccatgtccacagtgtttgcttttcctcaacaagtctgtagaggaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttactgacaatttaccatgtccacagtgtttgcttttcctcaacaagtctgtagaggaga 243
Query: 365 tattgaacttttattgataagaaaattgtaacccaggc-------tatatctttaagctc 417
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 242 tattgaacttttattgataagaaaattgtaacccaggcattttgttatatctttaagctc 183
Query: 418 tcaattatttaatttttctaagattgtgaatggtttcccacaatgctatagtttgccttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tcaattatttaatttttctaagattgtgaatggtttcccacaatgctatagtttgccttg 123
Query: 478 ccatatataatttgttgacgttaccagttcaacaggtaacagttagttacctag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccatatataatttgttgacgttaccagttcaacaggtaacagttagttacctag 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f06.g1 MSMg01no358_f06.g1 CHROMAT_FILE:
MSMg01no358_f06.g1 PHD_FILE: MSMg01no358_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:34 2005
(507 letters)
>mm_chr3_24824268_24825179
Length = 912
Score = 940 bits (486), Expect = 0.0
Identities = 504/512 (98%), Gaps = 5/512 (0%)
Strand = Plus / Plus
Query: 1 tcataaaataagtacaagctactcatggttttcacaaagaatgcatgtggacacatatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataaaataagtacaagctactcatggttttcacaaagaatgcatgtggacacatatgc 260
Query: 61 acatacacacacacatacacacagacacatacacacagacatatacacacagagagagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatacacacacacatacacacagacacatacacacagacatatacacacagagagagca 320
Query: 121 gtatagaaaaatcaactgaagcctagaatttttaaattctagt--aaaaaaaatgagcat 178
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 gtatagaaaaatcaactgaagcctagattttttaaattctagtaaaaaaaaaatgagcat 380
Query: 179 ttgcgttaaaaattctatctt---aacgtatttcatgaccaaaataacagagagtattcc 235
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttgcattaaaaattctatcttaagaacgtatttcatgaccaaaataatagagagtattcc 440
Query: 236 taccccatccttttactaataagttcggagtaaatttaggaaaaatagtattaaataaaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccccatccttttactaataagttcggagtaaatttaggaaaaatagtattaaataaaa 500
Query: 296 agctcacaaacacccttcaaatccttgcatttcacacacaagctactttcattaggatgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcacaaacacccttcaaatccttgcatttcacacacaagctactttcattaggatgg 560
Query: 356 cagtacataaaatagggaatgtgctgggtgtatttttcagcagattagctgtcctaatta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtacataaaatagggaatgtgctgggtgtatttttcagcagattagctgtcctaatta 620
Query: 416 cattttgctaggctaatgttaaaattagtttcaattccctaagtactcatcagttgatca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttgctaggctaatgttaaaattagtttcaattccctaagtactcatcagttgatca 680
Query: 476 cagagagagcaggcttgcaacttcctaggtac 507
||||||||||||||||||||||||||||||||
Sbjct: 681 cagagagagcaggcttgcaacttcctaggtac 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 912
Length adjustment: 10
Effective length of query: 497
Effective length of database: 902
Effective search space: 448294
Effective search space used: 448294
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
