Query= MSMg01no358_f21.b1 MSMg01no358_f21.b1 CHROMAT_FILE:
MSMg01no358_f21.b1 PHD_FILE: MSMg01no358_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(434 letters)
>mm_chr3_121555297_121556130
Length = 834
Score = 656 bits (339), Expect = 0.0
Identities = 403/431 (93%), Gaps = 16/431 (3%)
Strand = Plus / Minus
Query: 6 gaattcccattttaaaatgctgatgcttgcaaggcaggtactctacagctgacccacact 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaattcccattttaaaatgctgatgcttgcaaggcaggtactctacagctgacccacact 640
Query: 66 cacagccccaccttcttaaaaaaggattccctagtgaaaaagaatgaaattccgacatat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cacagccccaccttcttaaaaaaggattccctagtgaaaaagaatgaaattccgacatat 580
Query: 126 gctattgtatagagatacaata-catgatacatgtaatacacgatacatgaaataggcta 184
||||||||||||||| | | | || || ||| |||||||||||||||| |
Sbjct: 579 gctattgtatagaga------agcct--ta-----aaaacatgatacatgaaataggcca 533
Query: 185 gacacaacaggagccgtccgtattcgacgatctcactcagatgtctacaacagtcaaacg 244
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct: 532 gacacaacaggagccgtccatattcaatgatctcactcagatgtctacaacagtcaaacg 473
Query: 245 tacagagatagaaagcatagcagtgtggtcactgcaggatttaagaaaggggacactgga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tacagagatagaaagcatagcagtgtggtcactgcaggatttaagaaaggggacactgga 413
Query: 305 cgtcattgttgaatgagtacaggaattcagga-tttaaaacagtctaagtcaggtgtggt 363
|||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct: 412 tgtcattgttgaatgagtacagggattcaggattttaaaa-agtctaagtcaggtgtggt 354
Query: 364 ggcccaggcctgtaatcccagcactcagaaggcagcccctctgtaatgggaggttatcct 423
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 353 ggcccaggcctgtaatcccagcactcggaaggcagcccctctgtaatgggaggttatccc 294
Query: 424 aagctacagag 434
| |||||||||
Sbjct: 293 aggctacagag 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f21.g1 MSMg01no358_f21.g1 CHROMAT_FILE:
MSMg01no358_f21.g1 PHD_FILE: MSMg01no358_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:37 2005
(388 letters)
>mm_chr3_121345107_121345894
Length = 788
Score = 739 bits (382), Expect = 0.0
Identities = 388/392 (98%), Gaps = 4/392 (1%)
Strand = Plus / Plus
Query: 1 caatgcaaagaaatttagtttgtggtttcagtttaagcttaattaatttttaaagacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgcaaagaaatttagtttgtggtttcagtttaagcttaattaatttttaaagacatc 260
Query: 61 gccttcagccaaagttaggggtttttatcttctaaccctggctgttaatcaaggtctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttcagccaaagttaggggtttttatcttctaaccctggctgttaatcaaggtctttt 320
Query: 121 ctttggcaggtaggccctggttagagaaatgtgaagttgtatctctcttgagctttcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttggcaggtaggccctggttagagaaatgtgaagttgtatctctcttgagctttcttg 380
Query: 181 gaggtagattataagagaggacgggcagagcctttctttgggaagacagagaagatggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtagattataagagaggacgggcagagcctttctttgggaagacagagaagatggtt 440
Query: 241 ctagaagcagaggaggaaagaagatctccaacaacagaggaataaagaaactgtgagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagaagcagaggaggaaagaagatctccaacaacagaggaataaagaaactgtgagata 500
Query: 301 tgtatatatatctcattcatatatataatatatttattcatatata----ataaccataa 356
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tgtatatatatctcattcatatatataatatatttattcatatatatataataaccataa 560
Query: 357 agaatgaagtcatgtcatctttaggaaaatgg 388
||||||||||||||||||||||||||||||||
Sbjct: 561 agaatgaagtcatgtcatctttaggaaaatgg 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
