XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTGGGAAA
AGTTTGATCTTTGAAATCAATTTCTAATTTCTTCTTCTCCCCTCTTGTTT
CTTCTTTGTTCACAGTTACTTAACAAACCACCACGAACCAACCACCAACT
CACACATGTTGGGGCCCTAGCATTTATATACCCTCTGAAAAGTTCCCAGA
ATTTCAAATATCACACAATGTCAGAAACTATCTGCAGCTGGCAAAATCAC
ACCTCTGCTAGAGCACGAGGCAAATCACAGTCACCTGCTATGAAGCAGCC
CCACATCCCCACACTTGGGATTAAAACAAAAACATATTCTTATAATATTT
CTGTGCTTTTCAAAGAAACCAAACTGCCAATGTTGTCACTACATCTCATT
CCCTTCCTCTGTACCTAGCTAGCTAACAGCCTTCTAGGGTCAGTTTAGAT
CTTTTTTCAGAATGTCCTTCCCGGTCCCTAAACCTTAGATAGCACCTCGG
ACAGAGCTCTATGGAAAATGTCTATGCTAGGTCATTTATCACAGTGGACT
GCTGTTAAGGGGAAGGGCTGACCATACCGGACTAGGTGTTCAATTCATCT
GGCAAGTGACCCGGGGGAGGAAGATAACAATGTGAACTACTACTTGGGGG
TGGCTGGGGGAAGTAAATAACTGAAGGTTCATATGTCCTCGGGAACCAGT
TCCATTGCCCCACCCCCACTGGGTGGAG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTTACATTGTTGAAACTTATTTTTCTCAGGTCCATGTT
CCAGAAGCCAGAAACCTGGTGGGGATGTGTGGAACATTGGACCGAGCAAG
GAAACAAGGTAAGGTTGAGTGGGTTCAGGGTCTCCAGCACCCATGCACCC
ACCTGAGAGAGTATGCAGCTCCCTACTCCATACCAGATTCCTGGCCTGAA
ACATGAGCCATACTAATAACATAGAAAACATGACCTGCAGAAATGTATCC
CAGAATAGAATTCTCCCTTCTAATGAGATATCTAGAGGCTCTAAGAGTTT
AGCAAATAACTCTTCTCAGACGTTCCTCCCTGCAAAAGTGCATAAACTCT
AGTCAAACTGAGGAAGTGGTATGCACCCATTTTCCATGATGAACAATCAA
TAAACAGAACTAAGGACTGTCTCTTTTTTCAAGAACAGCCATAGGGAACA
TGAAGAAAGCCTTTATCTTCAGAGCTATGCTACCTAAGGCTTCCCCAGAA
AGTGTTCTATGATCCCTAACAAACACTGCTTAAACTAAGGACTTTCCCTG
ATTGAGCTTATCCCGAATTTCCCTTTAACCCCTGGCCAAGGGTTTCTTGT
TCCATCCCCTGGGGCTTCTTCCATTTTAAAGCCCTTTCACAAATTTTCCA
CCTGGGGCTCGGAAGTCCCCATAAATTTGTGAATACTTTTCTGTCACG

Query= MSMg01no358_h06.b1 MSMg01no358_h06.b1 CHROMAT_FILE:
MSMg01no358_h06.b1 PHD_FILE: MSMg01no358_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:43 2005
         (534 letters)



>mm_chr3_98175406_98176339
          Length = 934

 Score =  928 bits (480), Expect = 0.0
 Identities = 520/546 (95%), Gaps = 21/546 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgggaaaagtttgatctttgaaatcaatttctaatttcttcttctcccctct 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 194 gaattccttgggaaaagtttgatctttgaagtcaatttctaatttcttcttctcccctct 253

                                                                       
Query: 65  tgtttcttctttgttcacagttacttaacaaaccaccacgaaccaaccaccaactcacac 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtttcttctttgttcacagctacttaacaaaccaccacgaaccaaccaccaactcacac 313

                                                                       
Query: 125 atgttggggccctagcatttatataccctctgaaaagttcccagaatttcaaatatcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgttggggccctagcatttatataccctctgaaaagttcccagaatttcaaatatcaca 373

                                                                       
Query: 185 caatgtcagaaactatctgcagctggcaaaatcacacctctgctagagcacgaggcaaat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 374 caatgtcagaaactatctgcagctggcaaaatcacacctctgctagagcatgaggcaaat 433

                                                                       
Query: 245 cacagtcacctgctatgaagcagccccacatccccaca----------------cttggg 288
           |||||||||| ||| |||||||||||||||||||||||                ||||||
Sbjct: 434 cacagtcacccgctgtgaagcagccccacatccccacatccccacatccccacacttggg 493

                                                                       
Query: 289 attaaaacaaaaacatattcttataatatttctgtgcttttcaaagaaaccaaactgcca 348
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 494 attaaaacaaaaacatattcttataatatttct-----tttcaaagaaaccaaactgcca 548

                                                                       
Query: 349 atgttgtcactacatctcattcccttcctctgtacctagctagctaacagccttctaggg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atgttgtcactacatctcattcccttcctctgtacctagctagctaacagccttctaggg 608

                                                                       
Query: 409 tcagtttagatcttttttcagaatgtccttcccggtccctaaaccttagatagcacctcg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcagtttagatcttttttcagaatgtccttcccggtccctaaaccttagatagcacctcg 668

                                                                       
Query: 469 gacagagctctatggaaaatgtctatgctaggtcatttatcacagtggactgctgttaag 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gacagagctctatggaaaatgtctatgctaggtcatttatcacagtggactgctgttaag 728

                 
Query: 529 gggaag 534
           ||||||
Sbjct: 729 gggaag 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)