Query= MSMg01no358_j05.b1 MSMg01no358_j05.b1 CHROMAT_FILE:
MSMg01no358_j05.b1 PHD_FILE: MSMg01no358_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:52 2005
(536 letters)
>mm_chr3_12177198_12178133
Length = 936
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%)
Strand = Plus / Minus
Query: 9 attcaagttacaggcatctttaagtatccatgtgggtgcttggaactgaacccaggtcct 68
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 844 attcaagttacaggcatctttaagtatccatgtgggtgcttggaactgaacctaggtcct 785
Query: 69 gtgcaagagcaacaggtgctgtttccctctgagccacctctacaaccctctggtacagca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gtgcaagagcaacaggtgctgtttccctctgagccacctctacaaccctctggtacagca 725
Query: 129 atcataaagttcttgctgattgataaatattatatatcatgccattgataattaacatta 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atcataaagttcttgctgattgataaatattatatatcatgccattgataattaacatta 665
Query: 189 taaattaaaggaataaggaaagtgaattgcaggtatacataaaatcagaatagaatctag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taaattaaaggaataaggaaagtgaattgcaggtatacataaaatcagaatagaatctag 605
Query: 249 tcaaaaggaaacataatttctacaagactacatcctcattcaaaattttagccagagaaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tcaaaaggaaacataatttctacaagactacatcctcattcaaaattttagccagagaaa 545
Query: 309 gagatactttaatgacattcattttaaattagcttccatgtttccataccttatttttga 368
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagacactttaatgacattcattttaaattagcttccatgtttccataccttatttttga 485
Query: 369 ttgatgctctgatcctcttccaattctcccttcctcccttcccttttattgaccttttgc 428
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgatgctctgattctcttccaattctcccttcctcccttcccttttattgaccttttgc 425
Query: 429 ctcaaatcccacttgttccactaagttgtcctttctttacatcccttcccagaaattatc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctcaaatcccacttgttccactaagttgtcctttctttacatcccttcccagaaattatc 365
Query: 489 ttattttccaggttccggcccttgactatgtcactctcatctggatat 536
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 364 ttattttccaggttccggcccttgattatgtcactctcatctggatat 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_j05.g1 MSMg01no358_j05.g1 CHROMAT_FILE:
MSMg01no358_j05.g1 PHD_FILE: MSMg01no358_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:53 2005
(490 letters)
>mm_chr3_12006095_12006983
Length = 889
Score = 785 bits (406), Expect = 0.0
Identities = 469/490 (95%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 1 aataaaattttctgtcctactttctagactgtgacctctcagtgtctaactccagaagtc 60
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 201 aatacaattttctgtcctactttctggactgtgacctctcagtgtctaactccggaagtc 260
Query: 61 tcttgaaacagctactacagctctgatttctaagccattggcttctcagaagacatgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tcttgaaacagctactacagctctgatttctaagccattggcttctcagaagacatggag 320
Query: 121 aattctggcccatgttcatttcaccaatttcaaactagtgagacttttattcatctagct 180
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct: 321 aattctggcccatgttcatttcaccaatttcaaactaatgagacttttgttcatctaggt 380
Query: 181 gtctacctccaatccccactaaaaggctttacggtttttatttggtttcaccttaataca 240
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 381 gtctacctccaagccccactaaaaggcttta-tgtttttatttggtttcaccttaatata 439
Query: 241 gcatcttcatattattttgaaggttatcagaaactcattttccacttttgctatcttact 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 ccatcttcatattattttgaaggttatcagaaactcattctccacttttgctatcttact 499
Query: 301 tgtctcaccactgtcatggaatttatattcatctctgtgttcctctttaatataaaacgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 tgtctcaccactgtcatggaatttatattcatctctgtgttcctctttaatataaaactg 559
Query: 361 ttttaaaattatacaaccagagataattttgtgggaatgtccaaagttttatgcaatcca 420
|||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct: 560 ttttaaaattatgcaaccagagacaattttgtgggaatgtccaaagttttatccaattca 619
Query: 421 tgagaagcagttgtaattgcaaagatgtaattattatttgggcactcttcaaattatttt 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 tgagaagcagttgtgattgcaaagatgtaattattatttgggcactcttcaaattgtttt 679
Query: 481 tctctaaaat 490
||| ||||||
Sbjct: 680 tctgtaaaat 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 889
Length adjustment: 10
Effective length of query: 480
Effective length of database: 879
Effective search space: 421920
Effective search space used: 421920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
