Query= MSMg01no359_c04.b1 MSMg01no359_c04.b1 CHROMAT_FILE:
MSMg01no359_c04.b1 PHD_FILE: MSMg01no359_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
(534 letters)
>mm_chr3_66489895_66490828
Length = 934
Score = 996 bits (515), Expect = 0.0
Identities = 527/531 (99%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 5 gaattctggggctcttcttgtccccgccttcc-aatagtggggcttcagataggtaccat 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 567 gaattctggggctcttcttgtccccgccttccaaatagtggggcttcagataggtaccat 508
Query: 64 cacaccacattgggactgggaggtccaaactcaggtcaataaagctatctcttaactttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cacaccacattgggactgggaggtccaaactcaggtcaataaagctatctcttaactttt 448
Query: 124 agggtgggcttctgacttcttcttctgtatttgatgctttggcttcacctacattttgtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agggtgggcttctgacttcttcttctgtatttgatgctttggcttcacctacattttgtt 388
Query: 184 catttcttcctctgctctgagactgcttttactttctgccaacggtgttaaccgggtcac 243
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 catttcttcctctgccctgagactgtttttactttctgccaacggtgttaaccgggtcac 328
Query: 244 actgctgaggtagggggcatccatattccattggcatgctcagcttctggtaggggcctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 actgctgaggtagggggcatccatattccattggcatgctcagcttctggtaggggcctg 268
Query: 304 gatgtgagtagaaggttgggattctgtatttggcataggccatctcagatgagatgtaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatgtgagtagaaggttgggattctgtatttggcataggccatctcagatgagatgtaat 208
Query: 364 agcgtctgtcaccttttcagcctggcagcgccatactgctttgggtgggtgactcaggta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agcgtctgtcaccttttcagcctggcagcgccatactgctttgggtgggtgactcaggta 148
Query: 424 aacctcttgctcacttctatatccaactactagatatccagagcataagttaacaaacca 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 147 aacctcttgctcacttctatatccatctactagatatccagagcataagttaacaaacca 88
Query: 484 cagtggctggggcacttatttactgtgggccagtgtgcttggctcatggga 534
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cagtggctggggcacttatttactgtgggccagtgtgcttggctcatggga 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_c04.g1 MSMg01no359_c04.g1 CHROMAT_FILE:
MSMg01no359_c04.g1 PHD_FILE: MSMg01no359_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
(491 letters)
>mm_chr3_66338118_66339008
Length = 891
Score = 934 bits (483), Expect = 0.0
Identities = 489/491 (99%)
Strand = Plus / Plus
Query: 1 tcatccttcctagttcttcacagtgtctcctgcctttattctcatgtgtttcatttaata 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatccttcctagttcttcacagtatctcctgcctttattctcatgtgtttcatttaata 260
Query: 61 ctgctccatcagcaactcactggcataaacatctccattccatatacctgtggtcccgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctccatcagcaactcactggcataaacatctccattccatatacctgtggtcccgtt 320
Query: 121 cgaatccaagcacagaaaaacaaaccattgtatgttttatctcaaggaaacctgtacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaatccaagcacagaaaaacaaaccattgtatgttttatctcaaggaaacctgtacccc 380
Query: 181 agcagtgcacatgtacatcatgtgagatgtgtgttattctgcatataaaatatactttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagtgcacatgtacatcatgtgagatgtgtgttattctgcatataaaatatactttag 440
Query: 241 gacagggtcttaatatatagtgagaccagcctaaaagttgctatattcattttttttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagggtcttaatatatagtgagaccagcctaaaagttgctatattcattttttttcta 500
Query: 301 ttgctgtgataattaccaaaaacaacttgaggaagaaaggttttatctgggtttatattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctgtgataattaccaaaaacaacttgaggaagaaaggttttatctgggtttatattt 560
Query: 361 ccacatcatagtggatcatggagggaaatcagggcaggagctcaaggcaggaacatggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacatcatagtggatcatggagggaaatcagggcaggagctcaaggcaggaacatggag 620
Query: 421 aaaggaaccaaaacagaggtgttcctgcttagtgcttcccctcaggctcaagttcagctt 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaggaaccaaaacagaggtgttcctgcttagtgcttcccctcaggctcaagttcagctt 680
Query: 481 tcttatccctt 491
|||||||||||
Sbjct: 681 tcttatccctt 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
