BAC Information

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BAC

Clone NameMSMg01-359H21
Chromosome3 (Build37)
Map Location 27,346,307 - 27,346,650
singlet/doubletsinglet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359H21.T7 (MSMg01no359_h21.b1)MSMg01-359H21.TJ (MSMg01no359_h21.g1)
ACCAG468894AG468895
length806808
length of high quality
(start - end)
211 (32 - 242)342 (55 - 396)
definitionCHROMAT_FILE: MSMg01no359_h21.b1 PHD_FILE: MSMg01no359_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:00 2005CHROMAT_FILE: MSMg01no359_h21.g1 PHD_FILE: MSMg01no359_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGACTCACTATATGCAGAGGACCCGCGGAATTCCTTCTGTTTTCGCTTT
TTTTTTTCTGTTGCCACATATGTGTGACATGCATGTGTGTATATGCATGT
TTGCATTGGGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAC
TGACACCGTGCCTGGTGTCAATAATCATTCCTGATCACTCTTCCACCTTA
ATCACAGGGTCTCTCAATCAAACCCAGAGTGCATCAATATGCCTAGCCTT
ACTACCCAACTTGCTCTGAGGATCCCTTCTTCATCCTCTGAAGCTGGAAT
TCCACGTTGTCTTAATCAGGGTTTCTATTCCTGCACAAACATCATGACCA
ACAATCAAATCTTCCACCAAAATTTTCATTCCCCTTACACTTCCCCACCC
CCCCTTATCCCTCAACAACACATAACCTCCAACCCCTCCACACTTACTAA
TCACCATTCCACCTCAACCCCCCCCCCCCCACTCTTCCCTCCTTTATTAC
CACCATTTCAACCCCCACCTTCTTCTCAAATACCATTCCCTACATATACA
AAATCTCCCACCCCACCTCACCTTCTCAACCACCTCTTTCCCCCATAATA
CCCTTTTCCCCCCCCCCCCTCTCTTCTTTTCCCCCCCTCCCCTTCCCCCT
CCCTTCTCAATCCCCCCATTTACATACCCCCCACCTCCTACCATTCCTCC
ACCCCTCTCCACCCCATTCATTATTCTCCTCCCCCATCTTTCTATCCCCT
TCTCCTACCTCACACTTACATCTCTCCCCTCTTATATCCCCCCCCATCAT
CTTTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTAAATAAAATTTAGGGTTGGCAATATGGCTCAGCAGGTAAAGATGC
CTGCTGCCATGGGTGCCAACATGAGCCCAGCCCCAGAGCTGATGTGGAGG
AAGAAGGGAACTGACTAACGACTGGTCTCTGACCTCTACCATGGTATGCT
TGTGAACACACACACACACACACACACACACACACACACAAAAGCACACA
CAAATTGATAAAGATAAAAGTTAAAAACTTTTAAAGAGAGAGAGAAATGT
CTCTTCGTCATGAAGGTTAGCCCTGAGATAGAAGCCCATCATTTGGCGTC
TACGAGTAAGTGGCATTATTAAGTCCACTGAGGTGCACAAACCCTTGTCA
GCCGGAAGTAGAGGCGGATTTGAAACTGAAATCCAGACTCCCATTTTTTT
CTTGTACAGACCCTCCTGTTGTACAACTCGTTATGGCTCAATTGTGACTT
CTCAATTTTCGAGGACTTCTTTGGGTCCCGGGGTAAAACTTGGTGCGCTT
TATCCCTGCATATTAATCCTCGTTTTTTCTTCCCTTTCTATATATCCTTG
TTTTGGTTCTCCCGCTTTCTTCTCTTCTTGTACATATAATTTTTGTGTGC
CGAAAGTTTCTCTCCCCATTCCGTTTCCTACCCTTTCTCTCTTCTTCTCT
TATTTCTATTTTTTCCCCCTTTCCTTTTTTTCTTTTTTTCCCATATTCAT
TTCCTTCCCTTTTTCCCTTCCTTCTCTCGCATTCACGTCTTCTCTTTTCT
TCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_h21.g1 MSMg01no359_h21.g1 CHROMAT_FILE:
MSMg01no359_h21.g1 PHD_FILE: MSMg01no359_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:00 2005
         (342 letters)



>mm_chr3_27345909_27346650
          Length = 742

 Score =  561 bits (290), Expect = e-164
 Identities = 323/344 (93%), Gaps = 16/344 (4%)
 Strand = Plus / Minus

                                                                       
Query: 15  ggttggcaatatggctcagcaggtaaagatgcctgctgccatgggtgccaacatgagccc 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggttggcaatatggctcagcaggtaaagatgcctgctgccatgggtgccaacatgagccc 683

                                                                       
Query: 75  agccccagagctgatgtggaggaagaagggaactgactaacgactggtctctgacctcta 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agccccagagctgatgtggaggaagaagggaactgactaacgactggtctctgacctcta 623

                                                                       
Query: 135 ccatggtatgcttgtgaac----------------acacacacacacacacacacacaca 178
           |||||||||||||||||||                |||||||||||||||||||||||||
Sbjct: 622 ccatggtatgcttgtgaacacacacacacacacatacacacacacacacacacacacaca 563

                                                                       
Query: 179 cacacacaaaagcacacacaaattgataaagataaaagttaaaaacttttaaagagagag 238
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 cacacacaaaagcacgcacaaattgataaagataaaagttaaaaacttttaaggagagag 503

                                                                       
Query: 239 agaaatgtctcttcgtcatgaaggttagccctgagatagaagcccatcatttggcgtcta 298
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaaatgtctcttcatcatgaaagttagccctgagatagaagcccatcatttggcgtcta 443

                                                       
Query: 299 cgagtaagtggcattattaagtccactgaggtgcacaaaccctt 342
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 cgagtaagtggcattgttaagtccactgaggtgcacaaaccctt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)