Query= MSMg01no359_n03.b1 MSMg01no359_n03.b1 CHROMAT_FILE:
MSMg01no359_n03.b1 PHD_FILE: MSMg01no359_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:24 2005
(373 letters)
>mm_chr3_123087638_123088411
Length = 774
Score = 549 bits (284), Expect = e-161
Identities = 336/370 (90%), Gaps = 27/370 (7%)
Strand = Plus / Plus
Query: 5 gaattctctggtgagggctggctagggaaaa-cgttaaaatttggaaacctagtcctaat 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggtgagggctggctagggaaaaacgttaaaatttggaaacctagtcctaat 264
Query: 64 gtactggtgaacgtaacacctcctgtctctaataaattaccaagtaaggattcaaacgtt 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtactagtgaacgtaacacctcctgtctctaataaattaccaagtaaggattcaaacgtt 324
Query: 124 tggttgaaggtagactgcgttccaagtgcagaatctaaaatttgctctaacttaggttgc 183
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tggttgaaggtagactgtgttctaagtgcagaatctaaaatttgctctaacttaggtggc 384
Query: 184 ttccaatgagtctttcgacaggatctcaagaaaataatcaaacttccttcaaaaccaatc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccaatgagtctttcgacaggatctcaagaaaataatcaaacttccttcaaaaccaata 444
Query: 244 tcaagaattcgaagctgggctagggatggctcaaagattaagaacatgcactgctcttcc 303
||||||| |||||||||||||||||||||||||||
Sbjct: 445 tcaagaa--------------------------aagattaagaacatgcactgctcttcc 478
Query: 304 aaaggacctgagttcaagtcccaagcactcacaccaggaggctcacaactacctgtagtt 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 479 aaaggacctgagttcaagtcccaagcacccacaccaggaggctcacaactacctgtagtt 538
Query: 364 tcagctccag 373
|||||||||
Sbjct: 539 ccagctccag 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space: 278460
Effective search space used: 278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_n03.g1 MSMg01no359_n03.g1 CHROMAT_FILE:
MSMg01no359_n03.g1 PHD_FILE: MSMg01no359_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:24 2005
(397 letters)
>mm_chr3_123271390_123272186
Length = 797
Score = 714 bits (369), Expect = 0.0
Identities = 390/397 (98%)
Strand = Plus / Minus
Query: 1 atatttcaggacaggaacctataactattcaagccaatgtactgcaatcattgttaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atatttcaggacaggaacctataactattcaagccaatgtactgcaatcattgttaaaaa 538
Query: 61 gagatcacaaaatccagtggagatgcaagatgtgaatgaagtggaaacatgagagggtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gagatcacaaaatccagtggagatgcaagatgtgaatgaagtggaaacatgagagggtac 478
Query: 121 atcaggaggaataagtcagatgcacacatgcagagatgtattccctgggatggaaagcaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 477 atcaggaggaataagtcagatgcacacatgcagggatgtattccctgggatggaaagcaa 418
Query: 181 aagacaataaatgggaatgagagaagaaaggaagagttcagtggactcttgaaatacaaa 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aagacgataaatgggaatgagagaagaaaggaagagttcagtggactcttgaaatacaaa 358
Query: 241 gggtgtggcctgtaaagtactatgtggtttaaagaccgtgtggctacaccatactaagat 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 357 gggtgtggcctgtaaagtactatatggtttaaagaccgtgtggctacaccatactaagat 298
Query: 301 atactgcgaatataatagaccacaccatgtttgagagacctggtattaagagtaaagaac 360
||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 297 atactgcgactataatagaccacaccacatttgggagacctggtattaagagtaaagaac 238
Query: 361 actgcaagcccagacacttgatgtatgtgcctagctg 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 actgcaagcccagacacttgatgtatgtgcctagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
