XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAATTCATGCTGAAA
TTTTGACCATAATATTAATTCACGGGTTATTGTGATTAATATAATTTTAA
TGTGATGAAGGTTTTTTAATCAATTCCACATCACATAAGAAGTTTTTCAA
CTGCATGCTGTGTTTTGCTTAAGATGAAGACCAATGTCATGATTCAAGTC
AGTATTCTCTCAAAAGTCACATGGAATCCAAAGATCGTGTCATACTGTTG
ACAAGGCTAATTTACAAGTCTGTTTTATTGCATACACTTGGCACTGTATT
TTGATGAGTTCTTAGGCAACCTGAAAGCATTTATCTAGACTTTCAACACA
TTGGTGGAGTGGTAAAATAGGGTCCCATTATAAGAATGCGAGATATTATA
TCTGTGGCATCTGTTACCTAATTAACATCAAGAGTGGATGCAGAGTGTTT
CAAATGGGAAGTCTGAAGCTTGGGAATTCTGAGACTTCTAGAGTATGCAC
TTAATTGCGACCCCAGATTTGTGAAGAGAGATTTCATTTGGTGATCAAAA
AAAAATATCCGCCCACTCCCCCCAAAAATTGCCTTTTACCCCGCTTGCCC
CTCGTAAAAATAAGCCGGATGTTTTTATTTTCCCCTCCCCCCCACCATTT
TCTCCTTTTACTTCACTTTCGCTATTCACACATTTTATTTCTATACCCCT
CTCAGAAATGTTACTTTTATTCCTCCTTTTTTTCCCCCCATACCTTCTTT
CTTTTTTATTCTCCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTTTCTTTTTTTAAGTTTCAATATTTTTATTATTAGATATTTTA
TTTATTTCCATTTTAAATTTTATCCCATCGCCTCATTTTCCCTCAAAAAT
CCACAATCCCATTCTCCCTCCCCCTGCTCACTAACCTACCCACTCCTGCT
TCCCTGTCCTCGAATTCCCCTATCTTAACTATCTAAGATAATTTTCTCTT
TTCTGGCAGGTTCTACAGAGGTATAACACATTTCCTTTCATGTATTATTC
AGAGTTCTTTAAAGGAACAGAACTGGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGNNNNNTNNNNTTTTTTTCTTTTTTTTTTTTTTTTCCCCCTCTTCCC
TTTCCCTTCTTCCTCTTTTTTTTCTTCTTTTTCCCCTTTCCCCCCTCTTT
TTTTTTTCCTTTTCCTTTTTCCCCTCCCCCTCCCCCCCCCCCCCTTTCTT
TTTCCTTTTCTTTCCCCCTCCCTTCCTTTTTTCCCTTTCTTTTCCCTTCC
TTCTTTTTTCCTTTTTTTTTTCTCTCCTCCTTTCTTTTCTTTTCCCCTTC
TTTTCTCTCTTTTTTTTTTTTTTTTCCCTTTTTCCCCTTCCTTTTCCTTT
CCTTTTTCTCTTTCCTTTTCTTTTTTTTTCTTTTTTCCTTTCTTCCCCTT
TTTTTTCCTCTCTTCCCCCTCCTTTTCTCCTTCTCCTCCCTCTTTTTTTT
TCCCTCTC

Query= MSMg01no359_n16.b1 MSMg01no359_n16.b1 CHROMAT_FILE:
MSMg01no359_n16.b1 PHD_FILE: MSMg01no359_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:26 2005
         (431 letters)



>mm_chr3_74889356_74890187
          Length = 832

 Score =  797 bits (412), Expect = 0.0
 Identities = 424/428 (99%), Gaps = 1/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaa-ttcatgctgaaattttgaccataatattaattcacgggttattgtgatta 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaattcatgctgaaattttgaccataatattaattcacgggttattgtgatta 264

                                                                       
Query: 64  atataattttaatgtgatgaaggttttttaatcaattccacatcacataagaagtttttc 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 atataattttaatgtgatgaaggtttttaaatcaattccacatcacataagaagtttttc 324

                                                                       
Query: 124 aactgcatgctgtgttttgcttaagatgaagaccaatgtcatgattcaagtcagtattct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactgcatgctgtgttttgcttaagatgaagaccaatgtcatgattcaagtcagtattct 384

                                                                       
Query: 184 ctcaaaagtcacatggaatccaaagatcgtgtcatactgttgacaaggctaatttacaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaaaagtcacatggaatccaaagatcgtgtcatactgttgacaaggctaatttacaag 444

                                                                       
Query: 244 tctgttttattgcatacacttggcactgtattttgatgagttcttaggcaacctgaaagc 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 tctgttttattgcatacacttggcactgcattttgatgagttcttaggcaacctgaaagc 504

                                                                       
Query: 304 atttatctagactttcaacacattggtggagtggtaaaatagggtcccattataagaatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atttatctagactttcaacacattggtggagtggtaaaatagggtcccattataagaatg 564

                                                                       
Query: 364 cgagatattatatctgtggcatctgttacctaattaacatcaagagtggatgcagagtgt 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgagatattatatctgtggcatctgttacctaattaacatcaagagtggatgcagagtgt 624

                   
Query: 424 ttcaaatg 431
           ||||||||
Sbjct: 625 ttcaaatg 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space:   347306
Effective search space used:   347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)