BAC Information

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BAC

Clone NameMSMg01-360A15
Chromosome3 (Build37)
Map Location 23,964,186 - 23,964,642
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A15.T7 (MSMg01no360_a15.b1)MSMg01-360A15.TJ (MSMg01no360_a15.g1)
ACCAG469311AG469312
length1,030762
length of high quality
(start - end)		---454 (78 - 531)
definitionCHROMAT_FILE: MSMg01no360_a15.b1 PHD_FILE: MSMg01no360_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:41 2005CHROMAT_FILE: MSMg01no360_a15.g1 PHD_FILE: MSMg01no360_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTATATTTATCTGTTTGTGGTGTAGAATTATACCCTCCCGTGAGCTT
CATCCATCCTTACTGTCACCCCGCCCCGGCGGTGCCGGGGTCAGGCGCTA
GCATATTCAAACATATCACTATAACAGCATAATTTATAAGTGTGTTGGTT
TGATAATGGTGTGTTGGAGACGAGGTTAACGAACGAGGTCGCCGGTGAAA
CCCTCGGAACGCGAAGTCAGCGTGAAATNTTTCATTACGAGCAACGAGAC
TACACGACAAACGGTGATGACGGAGGGGGCAACAGTCGAGTATATTCCCC
CCCCCCGCAACACCCCCTATACCTCCTGGCGGTGTGCAAGCATATAAGAT
ATCTTACCCTACAATATATAAACGANGATTCGTAATGGGGAGACGGCGCC
AGTTGGGAGACCACGAGGTGGGTGTGTGTTATACTGGTTGTCGGAAGTAT
TTTTTCTTGCTTGGCTTGTTTTGTTATCACACATTCTATGTGCGTGCCCG
ACTTGACCGCCTGTTGCTAGCCCGATTATTTTAGTGTGAGATATATACGA
CATTATCTGGAACGAGTATTTTCCCGTTTTTGGGCCGATGCACGCCCTAT
GCCTCCCACCGTTGCTCGCGCCCCACCACTTCACTAGACGACTATTCTAC
ATCTTAGTAGCACCCTGAGCTCTTCTATTATTGGAGGGGGTACCCCTTTG
TATATACAGTGTACAATTTGGTTCGTGGCGGNCGATTCCCCGCGCTATCT
CGCCCCTTCCCTATCCATTATAAGAGAATACACATTTGCGCTTTTTCTCT
CTCTGCCTCTTTCCGTCTGCGCGCTCGTATTCTGTCTTCTAATCTCTTTT
TCTCTGTTCTACACCTCTATTTTACATATGAGTTCTATATTCTCTTTGAA
TACTATATATATATGATAGTAACAATCATGTTATAATCTGTCTCAGTGCC
CGATGCATTTTAGTTGTGTGTTCGCGGACTCGGAGGTGCCGCAGACGGTG
TGTTGGTGAAAGCCGCGTCGCATACCTGTN

NCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATATATGAGTTATGTCAGGTTC
ACACCCACGTGTGTAAATACACATGGACACACACAAATAGAAAAAACTGT
AAATACTCTTTTTAGAAGATGTAACAACTTTATATATGTACATGCTGTAT
ACTGGGGTATCTTTGAACATATTCCAGTGATATCTAGGAAGTAATTTAGA
GTACTTGGAAAACTTATATTCAAAGATATCAGAATATCTGGAAGAAATGG
ATGTATTCAAAGATACACATGACCTACCAAAATTATATCAATAAGATACA
ACCAGAGACAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT
GAGTTCCAGGACAGCCAGGGCTATACAGAGGAACCCTGTCAAGAAAAACC
AAAGGAAAAAAAAAAGATACAACCAACTACCAAATCCATACAATGGAAAT
AGATTGAAGTAGCAAGAACTCATGTCTCCTACACACATAGAGAAGGACAA
AAACTAGACATTTTTTTTAAAAGACCCAATACCAATATTGTGCAACTCAA
TCTACAAAAATGAAAGGGAAAAACATTATCAGCCTCATTCGATGAAACTT
TCTCAGACCTAAAAGCAAAACCGATAAAAACACACCCAACCCAAATTTTT
TAAGGCTAAACCTCCCGGAATAACACATGGTCATTTTGGACTTAAAAAAT
TTCAGGGCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a15.g1 MSMg01no360_a15.g1 CHROMAT_FILE:
MSMg01no360_a15.g1 PHD_FILE: MSMg01no360_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:41 2005
         (454 letters)



>mm_chr3_23963986_23964839
          Length = 854

 Score =  822 bits (425), Expect = 0.0
 Identities = 448/457 (98%), Gaps = 3/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatatgagttatgtcaggttcacacccacgtgtgtaaatacacatggacacacacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatatgagttatgtcaggttcacacccacgtgtgtaaatacacatggacacacacaaa 260

                                                                       
Query: 61  tagaaaaaactgtaaatactctttttagaagatgtaacaactttatatatgtacatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaaaactgtaaatactctttttagaagatgtaacaactttatatatgtacatgctg 320

                                                                       
Query: 121 tatactggggtatctttgaacatattccagtgatatctaggaagtaatttagagtacttg 180
           |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tatattggggtatcttagaacatatcccagtgatatctaggaagtaatttagagtacttg 380

                                                                       
Query: 181 gaaaacttatattcaaagatatcagaatatctggaagaaatggatgtattcaaagataca 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gaaaacttatattcaaagatatcagaatacctggaagaaatggatgtattcaaagataca 440

                                                                       
Query: 241 catgacctaccaaaattatatcaataagatacaaccagagacaggcagatttctgagttt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 catgacctaccaaaattatatcaataagatacaaccagagacaggcagatttctgagtct 500

                                                                       
Query: 301 gaggccagcctggtctacaaagtgagttccaggacagccagggctatacagaggaaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggccagcctggtctacaaagtgagttccaggacagccagggctatacagaggaaccct 560

                                                                       
Query: 361 gtcaagaaaaaccaaaggaaaaaaaaaa---gatacaaccaactaccaaatccatacaat 417
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 561 gtcaagaaaaaccaaaggaaaaaaaaaaaaagatacaaccaactaccaaatccatacaat 620

                                                
Query: 418 ggaaatagattgaagtagcaagaactcatgtctccta 454
           ||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ggaaatagattgaagaagcaagaactcatgtctccta 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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