BAC Information

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BAC

Clone NameMSMg01-360H23
Chromosome3 (Build37)
Map Location 92,482,626 - 92,482,973
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2
Downstream geneLce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H23.T7 (MSMg01no360_h23.b1)MSMg01-360H23.TJ (MSMg01no360_h23.g1)
ACCAG469657AG469658
length778807
length of high quality
(start - end)		419 (43 - 461)348 (72 - 419)
definitionCHROMAT_FILE: MSMg01no360_h23.b1 PHD_FILE: MSMg01no360_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:15 2005CHROMAT_FILE: MSMg01no360_h23.g1 PHD_FILE: MSMg01no360_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAA
TTCAGAGAGGATGTCCTGTTAAACCACTATTACCATTCAGACTCTGCTTC
AATGTAAATATCTAATTTTTTCATTTTGATTTTCAGTGAGCCATTCATTA
TTCAATAATGTGTTTTTTAATCTCCTTGAGGTTGCATATTTTCTGTAATT
TCTGTTGCTGTTGATTTCTAATTATATTCCATTGTTATATGATAGAAAAG
AAGACATTTTTATTCCCTTATATTTTTAGGACTTACTTTGTGTCTTAAGA
TATGTTCTACTTTGGAGCAAGTTCCATGAGTTGCTAAAATGAACATGCTT
ACTGCAGCTACTGGGTAGAATGTGGTACAGATTATGTTAAATCCATTCCA
TCTAAGTGTCATTTACCATCAAGTTTCTTTGTCAATATTTTGGGGGAGCT
AGGTGACTTATCTGTTGTTGAGAGTCCAGTATTACCAACCAAAATTATTG
TACTGAAAAAAGTCTATTGCTTTCTATTCCAGGAAAATTTGATTTTATGT
AAAAGGTTTTGAAGAAATTCTTCCTATGGAAATTTAAATATTTGTTCCCC
CACTTTTTTTTTTTTTATTTTGTGGGTTTCGTGGATTGCTAATTTTTTTC
ATCCCACACCACTATTTTATTCTTACTTATTTATTTTCTCACAACCACTC
CACTCACTATAATCTTACTATTTCATAAATCTTTATATTAATCATCCCAC
CCCCTTTTTTTATTATTATTTTATAATG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAGATACTTAAACCTGGCATTCCTACAG
GGTATCTGTATTAGGAACCTGCCATTTTTCCATCACCCTCCTTTTGATTC
TTTCTGTGACCTCTGCAACCTGTAGCTCACATTGAGCTAATAAAACCTTG
AAGTTTCTTACATGACTAGTTTCATCCACACACTTCTATAACTGTCCCTA
TGTGTATGAACTTTAGACATCCACAGCAGTAAAACCCTACATGATAGATC
TGGCTCAGCGCCAAGAAATGTTGAGGTGTGGTTCTGAAAGTTTGTTTAGC
CTGTGCCATTTTGCACTTAAACTATCACAATGGAATATTAAGTAGAATAT
ATTTGGAATATGTGAAAATTAATGATATTTCTAGTCCAGATAAAAATGTC
TCATGAAAAAAGACATCATTTTTATATGGGATACCACAGACATGGATGTA
AACTGGTAATAATTGGCTGGATGAACCTGGTTTTTTTATAACCCCTATCT
TAAAAAGGCTCCTCTATTACCTATAACGCACATTTCTTTTTTCCCCCTCG
TTTCTGTTTTTTATACATCTCACCCAATCTTCATCCCTCTTTCCACTTCT
TTCCTCCCTTTTCAAAACTTTCCACACTTATCTCTTTCTTTCCCCTATAT
TTTTTACCTTTTCCCTTACATATTTCCCACTCTATTCCTTCTCCACACTT
CATTCTTTCTCTTTTTCCTTACTCTTCTCTTTCTGACATATTTTACCACA
TAATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h23.g1 MSMg01no360_h23.g1 CHROMAT_FILE:
MSMg01no360_h23.g1 PHD_FILE: MSMg01no360_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
         (348 letters)



>mm_chr3_92482426_92483173
          Length = 748

 Score =  658 bits (340), Expect = 0.0
 Identities = 346/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagatacttaaacctggcattcctacagggtatctgtattaggaacctgccatttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctagatacttaaacctggcattcctacagggtatctgtattaggaacctgccatttttcc 489

                                                                       
Query: 61  atcaccctccttttgattctttctgtgacctctgcaacctgtagctcacattgagctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atcaccctccttttgattctttctgtgacctctgcaacctgtagctcacattgagctaat 429

                                                                       
Query: 121 aaaaccttgaagtttcttacatgactagtttcatccacacacttctataactgtccctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaaccttgaagtttcttacatgactagtttcatccacacacttctataactgtccctat 369

                                                                       
Query: 181 gtgtatgaactttagacatccacagcagtaaaaccctacatgatagatctggctcagcgc 240
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 368 gtgtatgaactttagacatccagagcagtaaaaccctacatgatagatctagctcagcgc 309

                                                                       
Query: 241 caagaaatgttgaggtgtggttctgaaagtttgtttagcctgtgccattttgcacttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caagaaatgttgaggtgtggttctgaaagtttgtttagcctgtgccattttgcacttaaa 249

                                                           
Query: 301 ctatcacaatggaatattaagtagaatatatttggaatatgtgaaaat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctatcacaatggaatattaagtagaatatatttggaatatgtgaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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