BAC Information

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BAC

Clone NameMSMg01-360K08
Chromosome3 (Build37)
Map Location 109,110,060 - 109,110,452
singlet/doubletsinglet
Overlap genenone
Upstream geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360K08.T7 (MSMg01no360_k08.b1)MSMg01-360K08.TJ (MSMg01no360_k08.g1)
ACCAG469771AG469772
length779777
length of high quality
(start - end)
249 (67 - 315)425 (78 - 502)
definitionCHROMAT_FILE: MSMg01no360_k08.b1 PHD_FILE: MSMg01no360_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:27 2005CHROMAT_FILE: MSMg01no360_k08.g1 PHD_FILE: MSMg01no360_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTTCCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCTCTTTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATC
CACTTAGATTTGACCTTATTACAAGGAGATAAGTATGGTTCGATTCTCAT
TCTTCTACATGATAACAACCCTTCTGTGCCAGCACCAATTTGTTGAAAAT
GCTGTCTTTTCTCCACTGTATGGTTTTAGACTTCCTTGTCGAAGATTAAT
TGTCCATACTTGTTGGTGTGTCCTTTCTTTCCTCTTCTATTACATTCAAT
TGGGTCTCCTTGCCTGGTCCCCCTATATTATTTTTTTGATTCCCCTCCCT
TTTCCCTTCGTTCTTCATTCCTTTCGTATTCCATCAACTCTTCTCCTTTT
ACCTCCCTCTTTCTATATGACATTTTTTATTTTTTATTCCTATACCAACT
TTTTTATATCATTACAATTTATTACTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACGTGGCTGATGCAGGATAGAG
CAGCCTATCAAGGGCTCCCCTTTCTCCCTGAAGCTGGAATTCTGCCCCTT
AACACTTCCTGCAAGAAATAATTCAGGGAGGGTCAGATGGGATGACAAAT
ACAGGGACATCACTGGTCAATCATTTCAACCACTGTGAAATGTCTGATAA
CAGCTCACAATGCCAAAAACGGTGAGGAAGTTGACTCAGCCAGTCAAGTG
TTTGCCATATATGAGGACCTGAGTTCGAGCCCCCAGAACCCATGTAAGAC
CAAATACTTTTGGGAGGTGGAAATAGGCAGGTCCCTGGGGCTTGCTGGCC
AACCAGCTTAGCCAAAACAGCAAGCTCAGGGTTCAGTACAAGACTCTGTA
TCAAATTAAAAAAAAAAAAAAAAAAGGTAGGTGGTGATTGAAAACAACTG
ACATTCACCTCAAATTTCCATATCCATGTTCACACACCTGCATATACATA
CCTACATGTTCTCCCGCATTTTCTCCCACATCTTTTAACGGAACACTTTA
TAATCCACTCTGCTCAATTTCCCTCTCCCCTCTATAAAAAATCCTCCCTT
TTATCCTTGGTAATGCAATTCCCGCGAAATCTCCCCCCACGCCCCCTTTA
ATCACCTGTGCTCTTTTTCCTTACTCCCCTATACACTGGCCCTATTATCT
ATATATCCCCCATATACCTTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_k08.g1 MSMg01no360_k08.g1 CHROMAT_FILE:
MSMg01no360_k08.g1 PHD_FILE: MSMg01no360_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:27 2005
         (425 letters)



>mm_chr3_109110055_109110879
          Length = 825

 Score =  737 bits (381), Expect = 0.0
 Identities = 390/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgtggctgatgcaggatagagcagcctatcaagggctcccctttctccctgaagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cacgtggctgatgcaggatagagcagcctatcaagggctcccctttctccctgaagctgg 339

                                                                       
Query: 61  aattctgccccttaacacttcctgcaagaaataattcagggagggtcagatgggatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aattctgccccttaacacttcctgcaagaaataattcagggagggtcagatgggatgaca 279

                                                                       
Query: 121 aatacagggacatcactggtcaatcatttcaaccactgtgaaatgtctgataacagctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aatacagggacatcactggtcaatcatttcaaccactgtgaaatgtctgataacagctca 219

                                                                       
Query: 181 caatgccaaaaacggtgaggaagttgactcagccagtcaagtgtttgccatatatgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 caatgccaaaaacggtgaggaagttgactcagccagtcaagtgtttgccatatatgagga 159

                                                                       
Query: 241 cctgagttcgagcccccagaacccatgtaagaccaaatacttttgggaggtggaaatagg 300
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 158 cctgagttcgagcccccagaacccatgtaagaccacatacttatgggaggtggaaatagg 99

                                                                       
Query: 301 caggtccctggggcttgctggccaaccagcttagccaaaacagcaagctcagggttcagt 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  caggtccctggggcttactggccaaccagcttagccaaaacagcaagctcagggttcagt 39

                                            
Query: 361 acaagactctgtatcaaattaaaaaaaaaaaaa 393
           |||||||||||||||||||||||||||||||||
Sbjct: 38  acaagactctgtatcaaattaaaaaaaaaaaaa 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)