Query= MSMg01no361_a17.b1 MSMg01no361_a17.b1 CHROMAT_FILE:
MSMg01no361_a17.b1 PHD_FILE: MSMg01no361_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:57 2005
(602 letters)
>mm_chr3_73088894_73089896
Length = 1003
Score = 1094 bits (566), Expect = 0.0
Identities = 575/578 (99%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgat-aacatcacttacttgtctatttattttgtttcttcattcatttgttt 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaattctttgataaacatcacttacttgtctatttattttgtttcttcattcatttgttt 549
Query: 64 gttttgtagcaaaacttacaaataactactggtcaggaagctccactggagcaggtatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gttttgtagcaaaacttacaaataactactggtcaggaagctccactggagcaggtatct 489
Query: 124 taccatcctcttatatacattgaatattatttcaaataatgcctggtatattatacacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 taccatcctcttatatacattgaatattatttcaaataatgcctggtatattatacacag 429
Query: 184 ttaaaggatatttagtattttaataaaggatgaatgaattaaggaaaagtaattttttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttaaaggatatttagtattttaataaaggatgaatgaattaaggaaaagtaattttttct 369
Query: 244 aagatgtctttaacaccttgagacttcaaaaacttgtcatttgataacagagcaagatac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagatgtctttaacaccttgagacttcaaaaacttgtcatttgataacagagcaagatac 309
Query: 304 tgtcactgtttctggttcaagattaaatatattaggataaatgttattcctttatatctc 363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 308 tgtcactgtttctggttcaagattaaatatattaggataaatgttattactttatatctc 249
Query: 364 atcagaaaaaaatcctgatcttaaaaggtcagtaagaaagagtagaatgcacgcaatatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcagaaaaaaatcctgatcttaaaaggtcagtaagaaagagtagaatgcacgcaatatg 189
Query: 424 tactcactgataagtggatattagcccaaatcttaggatacccaagatataagatacaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tactcactgataagtggatattagcccaaatcttaggatacccaagatataagatacaat 129
Query: 484 ttgctaaacgcatgaaactcaagaagaatgaagaccaaagtgtggacactgtgccccttc 543
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttgctaaacgcatgaaactcaggaagaatgaagaccaaagtgtggacactgtgccccttc 69
Query: 544 ttagaattgggaacaaaacacctatggaaggaattaca 581
||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttagaattgggaacaaaacacctatggaaggaattaca 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_a17.g1 MSMg01no361_a17.g1 CHROMAT_FILE:
MSMg01no361_a17.g1 PHD_FILE: MSMg01no361_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:57 2005
(496 letters)
>mm_chr3_72904508_72905402
Length = 895
Score = 890 bits (460), Expect = 0.0
Identities = 487/496 (98%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 1 atctcttttccatccattgtcttcacagtgtcaaagaattttttaattcatatttataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcttttccatccattgtcttcacagtgtcaaagaattttttaattcatatttataat 260
Query: 61 gccatctctagaatctgtcttctttgtattaaactcggataccacagttaattccgtcac 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 261 gccatctctagaatctgtcttctttgtattaaactctgataccacagttaattccatcac 320
Query: 121 aattattcatttgagaatcaactccttttagatgtcagatcaaaataacttgttttattt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcattcatttgagaatcaactccttttagatgtcagatcaaaataacttgttttattt 380
Query: 181 tttcctcacttcaaaagcttttaatggtagtacatttacctactaattcaagtttcagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctcacttcaaaagcttttaatggtagtacatttacctactaattcaagtttcagtt 440
Query: 241 ttaattccttgattattgtgttcagggaatcaaattgggagaggtgtcaattctctaaga 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttaattccttgattattgtgttcagggaatcgaattgggagaggtgtcaattctctaaga 500
Query: 301 tattcccaacatcatcttgtggagtaaggtttcatacttcagtactctaaaaaccagaac 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tattcccaacatcatcttgtggagtaaggtttcatactccagtactctaaaaaccagaac 560
Query: 361 tttgacattttttttctgtactatactcttcaaatataaataaatttgaagatgtgagca 420
||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 561 ttttacattttttt-ctgtactatactcctcaaatataaataaatttgaagacgtgagca 619
Query: 421 gtcgtcctttggagggcgagagaacatgtattacaaactcttgggcataactagtgtcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtcgtcctttggagggcgagagaacatgtattacaaactcttgggcataactagtgtcct 679
Query: 481 catgataccacataaa 496
||||||||||||||||
Sbjct: 680 catgataccacataaa 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
