NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTACTTTTGACACACACAATGAAATCCCAATTCCCCTGC
AGGCTGCGGGGTCTTTGTTTCCTATTTTGTGCACTGTCTATCTCTCTGCA
TCTTTGAAGGAACAGCTGCAGAAGTCTCAGAAGCTCACAAGTGCTTCTTC
ACGGTGGGCTATTACCATCGGAACCTAACTGGCTGATGATTTCTCAATCA
CCATTTTGCAGTTTCCTTTTTAGGGGACCGAAAAGCTAAAGAAGAGGTTC
GCTTTTTCTGAAAGTCATAGAAAGCATCTGGATTGTTGGTGAGTGCCCTT
TCAAGCAACAAAACTATTTCTGATCAATGGGACTATGATGTATGATGTCA
TAAACACCTAAAACATCTTCTCAGATCTATAAAATACTCCTGTTGTCTAG
GGGGAACCAGAAACCTTAAAGGCAAATGAAAAGATAAGTGTATATCACCC
AGTTAAATAGGGGATTACTAACCAAATACAAGAGAAGAGTCCTATAAAGC
AGGAAAAAAACCAGCAGAATGCACAAATCCACATCCATCCACAAGGCTCA
TGGCACCGTGGTCAAAGGGCAGAACCACAAGCTCATCATTTGGGTTCCCA
TTACTCTCTCTTACAGGACCTTGAGCAGTTTATTCCATTGCTCTTTGTCT
CCATGGNCTTGTCTCTAAATAAGGATGATAACAACGAGTCTCT

NNNTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACTTCTTTGTCCTCC
CCATTTTGGTACAGAGATTGCAAGAACCTGGTGCTAGAGTTGACTGTTTT
GTTTTGTTTTGTTTTGTTTTCTTGGAAGGCTCTGCTAAGAAACCAGCTTC
ATGGCTGGAGTCTTGGCTGAACTGGTAAAGTGCCCTTTGCACAAGGATCA
CCATGTAAATCCAGATCCCTGGACCCCGTGTAAAAGAAAAGAAAATCTGA
GCATGGTCCTATATGACTGTGGTTGCAACCTTAGTGCAGGGCCTGCAGAG
ACAGGAGTGATCTCTGAAGCTTAGTCCCAGCCAGTCTAGGACCATGAGTG
AGTACCAAGTTTGGTGAGACACCCTGATTTAAAAGATAATGTGGAAATCA
ATAACAGAAAAGAGCACCTATTGTGATCTGTATGTTTGTCTCTGTTTCTC
TGCATGTATGTGTCTCTCTTTGCCTGTCTCTGTCTCCCTGTCCCTCTCTC
TGCTCTCTCTTTATTTCTGTCTCTGTCTCTCTGCCTCTCTCTCTCTCTCT
CTCTCTCTCTCGNACACACACACACACACACACACACACACTTATATTCA
CTCTTATAAATATATACATATACATACACATATATATACACACTTATACC
TATACATTTTTTTTCTTTTCTTTCTCTCTTCCTCTCCTTTACTTCTTTTT
TTTTTTTA

Query= MSMg01no361_d05.b1 MSMg01no361_d05.b1 CHROMAT_FILE:
MSMg01no361_d05.b1 PHD_FILE: MSMg01no361_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:10 2005
         (658 letters)



>mm_chr3_29069796_29070854
          Length = 1059

 Score = 1226 bits (634), Expect = 0.0
 Identities = 649/654 (99%), Gaps = 1/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttacttttgacacacacaatgaaatcccaattcccctgcaggctgcggggtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcatttacttttgacacacacaatgaaatcccaattcccctgcaggctgcggggtc 799

                                                                       
Query: 65  tttgtttcctattttgtgcactgtctatctctctgcatctttgaaggaacagctgcagaa 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttgtttcctattttgtgcgctgtctatctctctgcatctttgaaggaacagctgcagaa 739

                                                                       
Query: 125 gtctcagaagctcacaagtgcttcttcacggtgggctattaccatcggaacctaactggc 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 738 gtctcagaagctcacaagtgcttcttcatggtgggctattaccatcggaacctaactggc 679

                                                                       
Query: 185 tgatgatttctcaatcaccattttgcagtttcctttttaggggaccgaaaagctaaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgatgatttctcaatcaccattttgcagtttcctttttaggggaccgaaaagctaaagaa 619

                                                                       
Query: 245 gaggttcgctttttctgaaagtcatagaaagcatctggattgttggtgagtgccctttca 304
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaggctcgctttttctgaaagtcgtagaaagcatctggattgttggtgagtgccctttca 559

                                                                       
Query: 305 agcaacaaaactatttctgatcaatgggactatgatgtatgatgtcataaacacctaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcaacaaaactatttctgatcaatgggactatgatgtatgatgtcataaacacctaaaa 499

                                                                       
Query: 365 catcttctcagatctataaaatactcctgttgtctagggggaaccagaaaccttaaaggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 catcttctcagatctataaaatactcctgttgtctagggggaaccagaaaccttaaaggc 439

                                                                       
Query: 425 aaatgaaaagataagtgtatatcacccagttaaataggggattactaaccaaatacaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaatgaaaagataagtgtatatcacccagttaaataggggattactaaccaaatacaaga 379

                                                                       
Query: 485 gaagagtcctataaagcaggaaaaaaaccagcagaatgcacaaatccacatccatccaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaagagtcctataaagcaggaaaaaaaccagcagaatgcacaaatccacatccatccaca 319

                                                                       
Query: 545 aggctcatggcaccgtggtcaaagggcagaaccacaagctcatcatttgggttcccatta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggctcatggcaccgtggtcaaagggcagaaccacaagctcatcatttgggttcccatta 259

                                                                 
Query: 605 ctctctcttac-aggaccttgagcagtttattccattgctctttgtctccatgg 657
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctctctcttacaaggaccttgagcagtttattccattgctctttgtctccatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space:   679752
Effective search space used:   679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)