TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTATATACTGCCCCACTTTGGGTCCCTAAAATTTTATGTGAGAATG
CTTGCTTTGCTTAGCTAAATAAAGTACCACTTAAACTGTCTTTGTCTTAT
GATTAAATTCTCTACTTCAAAAATAAGAATCCAAAGACTCCTAGTATTTT
AGCCTTAATTTATATGAAAGTTGAATGTACAAACAAAACAGACTAGATGA
GATCAAAATAAATGTAGTTTTCAATTCAAGTTTATAATTGGATGCATCAG
AATTAACAAGAATTGTGTCAAAGCAATGAGTACTCTGACAAGATAATGTG
CACATGTAGAATGTACCCAAACCCTGTGAGTGAATCTGTTTAAGGCAAGA
ATAAACACTTAGTTTTCAAACTAAACTTAAATATGCAACTTAATTTCACT
ATACAGAGTATTTTTATAGAACAAAGCAACTCTTGATAATCTCAGTGCTC
TCTCACTAATACTATATCTGCACCTGTCACCGTCTTCAAAATATTTTGAA
TCTAGTTCATGAAGTAAAGCTAAAAAGAGAATGTAGACCTTTATATTCAT
AAGGTGCATGAAATATGATTTTCAACAAAGTGACTAAAACATGAATGAAT
AATGGTTTTGATAAACAGACATTCAAACATTTTTTTATTTTACATTTTTA
ATGTATATGCAAGTTTCTGGAGACACAAGTTTAGACCAGAAGCTTTGAAG
T

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGAGACACATGTGGCAATCTTTTTGTCTTGGACA
TTTTGACTACCCCTAAAAAGTTTTTTTAAGGTTCTTTGTTTATTGCCTTG
CTTGTTCCTTGACCCAGAACTGATATTATCATTTTGCATATACATAAAGT
GATAAAAAAAATCAGACTGGAAAAAAAACAAAACCAAAAAAACAAAACCA
AGAACAAACTGGTTCAGCCTCAGAACTGGCTGGGGTCAGGCTACAATGTT
GTCTAATTGTATTTTTTTCTTTCTCATCCTTTTTCCTGCCCTAGACAACC
TGTGGACTGACTGAGGTGGCTTGGTTGCTCTCTGTAAATGATTGAGGGGA
AAAGAGTGTAATCAAAGTTCAAAGGTCATATTATTAAAGCAGATCAGGGT
ACAGAAGTTTTTTTTTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGNTGNTTTAAATGGTGAATNTGTGTGTGNTTGATTGTTTATTTTTTN
NNANNNGATTTTATTTTTTTGTNNTGTTTGAGTAAAATTTTTGTTTAGTT
TATTTTTAGATTTGGAATTTTTAATATTTTAAGTGATTAAGNTTTATTTA
TGGTGGTGTGAATAAGTTTTTTTTNATTTTATTTAAAAATTGGAATTTTA
TTTTTTAGTTAGGAATTTTAAAAATTATTTTTTTATGGTTAATATTGGTT
TATATTG

Query= MSMg01no362_b07.b1 MSMg01no362_b07.b1 CHROMAT_FILE:
MSMg01no362_b07.b1 PHD_FILE: MSMg01no362_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:19 2005
         (646 letters)



>mm_chr3_12229351_12230397
          Length = 1047

 Score = 1135 bits (587), Expect = 0.0
 Identities = 631/649 (97%), Gaps = 7/649 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttatata------ctgccccactttgggtccctaaaattttatgtgagaatgc 58
           ||||||||||||||      |||||||||||||||||||||||| |||||||||||||||
Sbjct: 867 gaattccttatatactgcccctgccccactttgggtccctaaaaatttatgtgagaatgc 808

                                                                       
Query: 59  ttgctttgcttagctaaataaagtaccacttaaactgtctttgtcttatgattaaattct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttgctttgcttagctaaataaagtaccacttaaactgtctttgtcttatgattaaattct 748

                                                                       
Query: 119 ctacttcaaaaataagaatccaaagactcctagtattttagccttaatttatatgaaagt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctacttcaaaaataagaatccaaagactcctagtattttagccttaatttatatgaaagt 688

                                                                       
Query: 179 tgaatgtacaaacaaaacagactagatgagatcaaaataaatgtagttttcaattcaagt 238
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 687 tgagtgtacaaacaaaacagactatatgagatcaaaataaatgtagttttcaattcaagt 628

                                                                       
Query: 239 ttataattggatgcatcagaattaacaagaattgtgtcaaagcaatgagtactctgacaa 298
           |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 627 ttataattggatgcatcagatttaacaagaatagtgtctaagcaatgagtactctgacaa 568

                                                                       
Query: 299 gataatgtgcacatgtagaatgtacccaaaccctgtgagtgaatctgtttaaggcaagaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 gataatgtgcacatgtagaatgtacccaaaccctgtgagtgaatctgtttaagacaagaa 508

                                                                       
Query: 359 taaacacttagttttcaaactaaacttaaatatgcaacttaatttcactatacagagtat 418
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taaacacttagttttcaaattaaacttaaatatgcaacttaatttcactatacagagtat 448

                                                                       
Query: 419 ttttatagaacaaagcaactcttgataatctcagtgctctctcactaatactatatctgc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttatagaacaaagcaactcttgataatctcagtgctctctcactaatactatatctgc 388

                                                                       
Query: 479 acctgtcaccgtcttcaaaatattttgaatctagttcatgaagtaaagctaaa-aagaga 537
           |||||||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct: 387 acctgtcaccttcttcaaaatgttttgaatctagttcatgaaataaagctaaataagaga 328

                                                                       
Query: 538 atgtagacctttatattcataaggtgcatgaaatatgattttcaacaaagtgactaaaac 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgtagacctttatattcataaggtgcatgaaatatgattttcaacaaagtgactaaaac 268

                                                            
Query: 598 atgaatgaataatggttttgataaacagacattcaaacatttttttatt 646
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgaatgaataatggttttgataaacagacattcaaacatttttttatt 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space:   659532
Effective search space used:   659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)