BAC Information

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BAC

Clone NameMSMg01-362C03
Chromosome3 (Build37)
Map Location 74,126,203 - 74,250,999
singlet/doubletdoublet
Overlap geneLOC667434
Upstream geneBche, LOC667425, LOC619764
Downstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362C03.T7 (MSMg01no362_c03.b1)MSMg01-362C03.TJ (MSMg01no362_c03.g1)
ACCAG470891AG470892
length765760
length of high quality
(start - end)
429 (70 - 498)501 (78 - 578)
definitionCHROMAT_FILE: MSMg01no362_c03.b1 PHD_FILE: MSMg01no362_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:23 2005CHROMAT_FILE: MSMg01no362_c03.g1 PHD_FILE: MSMg01no362_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,250,577 - 74,250,999)(74,126,203 - 74,126,691)
sequence
NCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAAGGATTACCATGGAAACTCTGCAGCAAATGCACAGTAAGG
ATTTCCCACATTTCCCCCAAAGAGATTGCGTATCTTTAGGTTTGGATAAT
TATGTAAGGGAAGGGAGGGTAGAACACTTGGTTGAAGAACCATTCTAACA
TTGATACCAGGTAGTCACCATTTCATTCTGACCCTCGAGCCAGATTGGAA
TCGTAATAAACACTATCTGGCCCAGAAGCAACACAGGTCCACTAGTCTAT
TCATTCTGAGGCCACATCACCACATCATTCTTTATATGTTAAGCAAATAT
ACTTGCTACATGCATACTTTGTCATGTCTCTGTTTAGCCTAAGTGGATTG
AGAGATACCTGCATGTGGAAGACCAGTGAATTCATTAGATCTATTTTCTC
CTCTGTAATATAGCAAATACAAGCATAACAAACCCTGGAAATTGAGCCAG
GATTAGCTACTCGAATTAGCTCAGCCCAAGACTGAAGATGTGAGACTTTT
TCATTTACCTTTAGATAATTAATAATTCTGCTCTTGAAACAGCTCTGATT
TTTTATGCCTTAACAATCCCTATATAAAATCCTGCTATCTTTTGGTCTAA
TTCGCCCTGGATTGTAATATTCCCCTTTGTCCCCCTCCCCCCACTTGTCT
TTATGGGCGCTATTTCCCTCATACACATGGTGCCCCCATTATTTTCTGTC
CCTTATCTTCCCGGN
NCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTTAGCCTTAAATTAATAGA
AAGAATGTATTTAGCAACAATAATTGATAAATATTGATAGAAGCATTTTC
AAGGATATATAGTTGGTTGTAGACTTGTGCTTATATTTAGAATTCTGCCT
GACAAAGTTTAAACAATAGGGTAAATAAATATATGACCTACCACCTAGAT
AATCCAATATGTAATATTGGATTATGTAATATAACTTGAAAATAGGCAGA
ATACTGGTACTACATTTTCATAACATCAAAAAACAATGACCCTCCAAATA
TATCACAATAATTACAATTAAATAAGCTTTGTGCACTCTTCTAAATATAC
ACTATGAATGTATCACATTCCTTTAATATTATTAGATATTTTCTTTATTT
ACATTTCAAATGTTATCACCTTTCTTGGTTCCCCTCCAAAAATCCTCTAT
TCACTTCTCCCTCTCCCTGCACACCAACCTACCCATTCCTCCTTTCTGGC
CCTGGAATTCCCCTATACTGGGGCATAGAGCCTTCACAGGACCAAAGGCC
TCTCCTCCCATTGATGATCAACTAGGCCATCCTCTGCTACATATGCAGCT
GGAGCCATAAATCCCCTCATGTACACTCTTTTTTAAGTTGGGGTTTTATG
CCTTGGGAAGAATTGGGAAGACCGGGTAAGTCACACTTATTGTTCCCTCC
TATCCGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_c03.b1 MSMg01no362_c03.b1 CHROMAT_FILE:
MSMg01no362_c03.b1 PHD_FILE: MSMg01no362_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:23 2005
         (429 letters)



>mm_chr3_74250377_74251205
          Length = 829

 Score =  716 bits (370), Expect = 0.0
 Identities = 411/426 (96%), Gaps = 6/426 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaaactctgcagcaaatgcacagtaaggatttcccacatttcccccaaagagattgc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 atggaaactctgcagcaaatgcacagtaagaatttcccacatttcccccaaagagattgc 564

                                                                       
Query: 61  gtatctttaggtttggataattatgtaagggaagggagggtagaacacttggttgaagaa 120
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 atatctttaggtttggataattatgtaagggaagggaggggagaacacttggttgaagaa 504

                                                                       
Query: 121 ccat--tctaacattgataccaggtagtcaccatttcattctgaccctcgagccagattg 178
           |  |  ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 503 c--tgatctaacattgataccaggtagtcaccatttcgttctgacccttgagccagattg 446

                                                                       
Query: 179 gaatcgtaataaacactatctggcccagaagcaacacaggtccactagtctattcattct 238
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 445 gaatcgtaataaacactatctggcccagaagcaacacaggtccagtagtctattcattcc 386

                                                                       
Query: 239 gaggccacatcaccacatcattctttatatgttaagcaaatatacttgctacatgcatac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggccacatcaccacatcattctttatatgttaagcaaatatacttgctacatgcatac 326

                                                                       
Query: 299 tttgtcatgtctctgtttagcctaagtggattgagagatacctgcatgtggaagaccagt 358
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgccatgtctctgtttagcctaagtggattgagagatacctgcatgtggaagaccagt 266

                                                                       
Query: 359 gaattcattagatctattttctcctct-gtaatatagcaaatacaagcataacaaaccct 417
           |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 265 gaattcattagatctattttctcc-cttgtaatatagcaaatagaagcataacaaaccct 207

                 
Query: 418 ggaaat 423
           ||||||
Sbjct: 206 ggaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no362_c03.g1 MSMg01no362_c03.g1 CHROMAT_FILE:
MSMg01no362_c03.g1 PHD_FILE: MSMg01no362_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:23 2005
         (501 letters)



>mm_chr3_74125999_74126899
          Length = 901

 Score =  855 bits (442), Expect = 0.0
 Identities = 480/498 (96%), Gaps = 10/498 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttagccttaaattaatagaaagaatgtatttagcaacaataattgataaatattgataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttagccttaaattaatagaaagaatgtatttagcaacaataattgataaatattgataga 264

                                                                       
Query: 65  agcattttcaaggatatatagttggttgtagacttgtgcttatatttagaattctgcctg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 agcattttcaaggatatatagttggttgtagacttgtgcttatatttagaattctgtctg 324

                                                                       
Query: 125 acaaagtttaaacaatagggtaaataaatatatgacctaccacctagataatccaatatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaagtttaaacaatagggtaaataaatatatgacctaccacctagataatccaatatg 384

                                                                       
Query: 185 taatattggattatgtaatataacttgaaaataggcagaatactggtactacattttcat 244
           ||||||||||||||||||||| |||||||||||||||||||||         |||| |||
Sbjct: 385 taatattggattatgtaatatcacttgaaaataggcagaatac---------atttccat 435

                                                                       
Query: 245 aacatcaaaaaacaatgaccctccaaatatatcacaataattacaattaaataagctttg 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 aacatcaaaaaacaatgaccctccaaatatatcacaataattacagttaaataagctttg 495

                                                                       
Query: 305 tgcactcttctaaatatacactatgaatgtatcacattcctttaatattattagatattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgcactcttctaaatatacactatgaatgtatcacattcctttaatattattagatattt 555

                                                                       
Query: 365 tctttatttacatttcaaatgttatcacctttcttggtt-cccctccaaaaatcctctat 423
           |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 556 tctttatttacatttcaaatgttatcacttttcttggtttccccttcaaaaatcctctat 615

                                                                       
Query: 424 tcacttctccctctccctgcacaccaacctacccattcctcctttctggccctggaattc 483
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 616 tcacttctccctctccctgcacaccaacctacccattcctccattctagccctggaattc 675

                             
Query: 484 ccctatactggggcatag 501
           ||||||||||||||||||
Sbjct: 676 ccctatactggggcatag 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)