Query= MSMg01no362_c03.b1 MSMg01no362_c03.b1 CHROMAT_FILE:
MSMg01no362_c03.b1 PHD_FILE: MSMg01no362_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:23 2005
(429 letters)
>mm_chr3_74250377_74251205
Length = 829
Score = 716 bits (370), Expect = 0.0
Identities = 411/426 (96%), Gaps = 6/426 (1%)
Strand = Plus / Minus
Query: 1 atggaaactctgcagcaaatgcacagtaaggatttcccacatttcccccaaagagattgc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 atggaaactctgcagcaaatgcacagtaagaatttcccacatttcccccaaagagattgc 564
Query: 61 gtatctttaggtttggataattatgtaagggaagggagggtagaacacttggttgaagaa 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 atatctttaggtttggataattatgtaagggaagggaggggagaacacttggttgaagaa 504
Query: 121 ccat--tctaacattgataccaggtagtcaccatttcattctgaccctcgagccagattg 178
| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 503 c--tgatctaacattgataccaggtagtcaccatttcgttctgacccttgagccagattg 446
Query: 179 gaatcgtaataaacactatctggcccagaagcaacacaggtccactagtctattcattct 238
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 gaatcgtaataaacactatctggcccagaagcaacacaggtccagtagtctattcattcc 386
Query: 239 gaggccacatcaccacatcattctttatatgttaagcaaatatacttgctacatgcatac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggccacatcaccacatcattctttatatgttaagcaaatatacttgctacatgcatac 326
Query: 299 tttgtcatgtctctgtttagcctaagtggattgagagatacctgcatgtggaagaccagt 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgccatgtctctgtttagcctaagtggattgagagatacctgcatgtggaagaccagt 266
Query: 359 gaattcattagatctattttctcctct-gtaatatagcaaatacaagcataacaaaccct 417
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 265 gaattcattagatctattttctcc-cttgtaatatagcaaatagaagcataacaaaccct 207
Query: 418 ggaaat 423
||||||
Sbjct: 206 ggaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_c03.g1 MSMg01no362_c03.g1 CHROMAT_FILE:
MSMg01no362_c03.g1 PHD_FILE: MSMg01no362_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:23 2005
(501 letters)
>mm_chr3_74125999_74126899
Length = 901
Score = 855 bits (442), Expect = 0.0
Identities = 480/498 (96%), Gaps = 10/498 (2%)
Strand = Plus / Plus
Query: 5 ttagccttaaattaatagaaagaatgtatttagcaacaataattgataaatattgataga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttagccttaaattaatagaaagaatgtatttagcaacaataattgataaatattgataga 264
Query: 65 agcattttcaaggatatatagttggttgtagacttgtgcttatatttagaattctgcctg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 agcattttcaaggatatatagttggttgtagacttgtgcttatatttagaattctgtctg 324
Query: 125 acaaagtttaaacaatagggtaaataaatatatgacctaccacctagataatccaatatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaagtttaaacaatagggtaaataaatatatgacctaccacctagataatccaatatg 384
Query: 185 taatattggattatgtaatataacttgaaaataggcagaatactggtactacattttcat 244
||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct: 385 taatattggattatgtaatatcacttgaaaataggcagaatac---------atttccat 435
Query: 245 aacatcaaaaaacaatgaccctccaaatatatcacaataattacaattaaataagctttg 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 aacatcaaaaaacaatgaccctccaaatatatcacaataattacagttaaataagctttg 495
Query: 305 tgcactcttctaaatatacactatgaatgtatcacattcctttaatattattagatattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgcactcttctaaatatacactatgaatgtatcacattcctttaatattattagatattt 555
Query: 365 tctttatttacatttcaaatgttatcacctttcttggtt-cccctccaaaaatcctctat 423
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 556 tctttatttacatttcaaatgttatcacttttcttggtttccccttcaaaaatcctctat 615
Query: 424 tcacttctccctctccctgcacaccaacctacccattcctcctttctggccctggaattc 483
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 616 tcacttctccctctccctgcacaccaacctacccattcctccattctagccctggaattc 675
Query: 484 ccctatactggggcatag 501
||||||||||||||||||
Sbjct: 676 ccctatactggggcatag 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
