BAC Information

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BAC

Clone NameMSMg01-362J16
Chromosome3 (Build37)
Map Location 81,606,086 - 81,751,075
singlet/doubletdoublet
Overlap geneLOC100041901, Ctso
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneTdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J16.T7 (MSMg01no362_j16.b1)MSMg01-362J16.TJ (MSMg01no362_j16.g1)
ACCAG471250AG471251
length772754
length of high quality
(start - end)		445 (46 - 490)472 (79 - 550)
definitionCHROMAT_FILE: MSMg01no362_j16.b1 PHD_FILE: MSMg01no362_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:02 2005CHROMAT_FILE: MSMg01no362_j16.g1 PHD_FILE: MSMg01no362_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,750,635 - 81,751,075)(81,606,086 - 81,606,557)
sequence
CTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGGCCAGCTTTGACTTTTTTCATGTGACTTTAAAGGTATTTAA
GTGATTGTTTACACTTGTACTCACCCGGAGTCACCCTGATTTTCAATGTC
CAGCACTCTTCCTTCCCTTTGACACCTTTACTCATCCTGCATCACCTTCA
CACTCCCACTACAAGCATGCTATCTATTTTATCTTCAGTGCCACAGTCTT
AGCTCTAAGTTTTAATACGCTTGTCTTGAGTTTTTGAAATAGTTGCTTAC
TTGAAAACTACAAGAAATATTATGGTCAGAAGGGTTTCTTGGGTATGTAA
CCTGGGAGTGATTATCCAAATCACTTGTATTCCACATTCAATCCAAATCC
ATTATATTCTATACAATGTGAATTTGGACAGACTCAAATATTAAGACTGC
GAAAAGGCTCATTGTTTTAGCATCTGAATTTTGTGAGTGGCGGTAGATAT
AAGTTGTAGCTTTAAACTCAGTTAGAAGCTATCTCATTTTAAATTTATTT
ATAGCGTGACTGGATATTGAATAACTCCCACACTAATTTTTATATGGCTT
CTTTTATACACCTCGGTGACTCTTCCTTTGAATCCTTTAATTAGAAACCT
TGTCTCTTACTCGAATACTCAACCAATCTATTCTTTTTACCATTACCCCT
CATTTTTTTTATACTTTATTCTCGCTTAACCACCCTTTTATACTTCTACT
TTCCTTTTTTCTCCCTCCTCCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATGGACAAAATGTCAGCCA
CAGAGAAGAAGCATTTAGCATGTTTGAGCACGGTCATGAAATAGTCATCA
CTACGTCAGTGATGCACATTAAGCAGAATTTAGCTGTGCTCTTGTGGATA
TGCTCTCTCAGCCTGGACTGGATAATCACATGGAAGGCCTGTGCTTCACT
CTCCCTAGAGATTGATTTGCATCAGTAGGTTATAATTTAGGATGTGTAAG
AATTGCCTAAAACACTGCTGGAAATTTCCCTAAGGCTCTGGATCACACAC
GAAGGGTTGAGGTAAGATATTTGACATCCGCAATGTCACAGGGTACTCAA
GGACTATGGGGAGCTATGGCCTATGTAGTTATGTCTGAAATACATCTGTA
TACCCAATTAATTGGATTCTATTTACTGGGGAAATTGAGTTTTATGTGCA
ATTAGTTACTTGCTGTAAAATCTTAAGAGTGCCAATGGACGGTAACTTTA
ATTTGGTCTTAATCTGTAACATCACTTGTTATGGTTAACACTTATGGTGA
ACTGGACTCCCCTGACAATTTAAGACCCGGATTCTTTTATGTCTCTCAGA
ATCTGATTGGTTAGGATGACTGCCACATTTTCTGTATGTCTGGATGAAGA
AACAACCTTTTGAAGCCTTACGCAATATGGTTCTTAAATGTTAATCCCGC
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j16.b1 MSMg01no362_j16.b1 CHROMAT_FILE:
MSMg01no362_j16.b1 PHD_FILE: MSMg01no362_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:02 2005
         (445 letters)



>mm_chr3_81750431_81751275
          Length = 845

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggccagctttgacttttttcatgtgactttaaaggtatttaagtgattgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaattctctggccagctttgacttttttcatgtgactttaaaggtatttaagtgattgtt 586

                                                                       
Query: 65  tacacttgtactcacccggagtcaccctgattttcaatgtccagcactcttccttccctt 124
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tacacttgaactcacccgaagtcaccctgattttcaatgtccagcactcttccttccctt 526

                                                                       
Query: 125 tgacacctttactcatcctgcatcaccttcacactcccactacaagcatgctatctattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgacacctttactcatcctgcatcaccttcacactcccactacaagcatgctatctattt 466

                                                                       
Query: 185 tatcttcagtgccacagtcttagctctaagttttaatacgcttgtcttgagtttttgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tatcttcagtgccacagtcttagctctaagttttaatacgcttgtcttgagtttttgaaa 406

                                                                       
Query: 245 tagttgcttacttgaaaactacaagaaatattatggtcagaagggtttcttgggtatgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tagttgcttacttgaaaactacaagaaatattatggtcagaagggtttcttgggtatgta 346

                                                                       
Query: 305 acctgggagtgattatccaaatcacttgtattccacattcaatccaaatccattatattc 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acctgggagtgactatccaaatcacttgtattccacattcaatccaaatccattatattc 286

                                                                       
Query: 365 tatacaatgtgaatttggacagactcaaatattaagactgcgaaaaggctcattgtttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatacaatgtgaatttggacagactcaaatattaagactgcgaaaaggctcattgtttta 226

                                
Query: 425 gcatctgaattttgtgagtgg 445
           |||||||||||||||||||||
Sbjct: 225 gcatctgaattttgtgagtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_j16.g1 MSMg01no362_j16.g1 CHROMAT_FILE:
MSMg01no362_j16.g1 PHD_FILE: MSMg01no362_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:02 2005
         (472 letters)



>mm_chr3_81605886_81606757
          Length = 872

 Score =  797 bits (412), Expect = 0.0
 Identities = 457/472 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatggacaaaatgtcagccacagagaagaagcatttagcatgtttgagcacggtcatg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatggagaaaatgtcagccacagagaagaagcatttagcatgtttgagcacggtcatg 260

                                                                       
Query: 61  aaatagtcatcactacgtcagtgatgcacattaagcagaatttagctgtgctcttgtgga 120
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aaatagtcatcactacatcagtgatgcacattaagcagaatgtagctgtgctcttgtgga 320

                                                                       
Query: 121 tatgctctctcagcctggactggataatcacatggaaggcctgtgcttcactctccctag 180
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctctctcatcctggactggataatcacatggaaggcctgtgcttcactctccctag 380

                                                                       
Query: 181 agattgatttgcatcagtaggttataatttaggatgtgtaagaattgcctaaaacactgc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatgatttgcatcagtaggttataatttaggatgtgtaagaattgcctaaaacactgc 440

                                                                       
Query: 241 tggaaatttccctaaggctctggatcacacacgaagggttgaggtaagatatttgacatc 300
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tggaaacttccctaaggctctggatcacacacggagggttgaggtaagatatttgacatc 500

                                                                       
Query: 301 cgcaatgtcacagggtactcaaggactatggggagctatggcctatgtagttatgtctga 360
            | |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tgtaatgtcacagggcactcagggactatggggaactatggcctatgtagttatgtctga 560

                                                                       
Query: 361 aatacatctgtatacccaattaattggattctatttactggggaaattgagttttatgtg 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 561 aatacatctgtatacccaattaattggattctatttactgggaaaattgagttttatatg 620

                                                               
Query: 421 caattagttacttgctgtaaaatcttaagagtgccaatggacggtaacttta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caattagttacttgctgtaaaatcttaagagtgccaatggacggtaacttta 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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