NCCCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCTTATAAACAGGAAGCAACAGTCTTATACCGATTGCCT
GCTTTTAGTACTTTATATCAATTCTACTCACTTTTAAGACTATAATGGCT
GTATTTTCCACTGTATCTCCCTTTTTTGTGGCTTTTAAAGACAGAAAAGG
ATCACAACGTGACTTCCTTCTATTTGTGAAATTCCTCAGATACAACATTA
TTTACAATTTTTTTCTGAATCTGAATTTTTAAGATTTTAGGATAATGTGG
GGTTCATTCTTATAGAAGCATAAGCGCACTACAAACAGAACGAGAGAATA
ATGGGTTTATTTTGACAAAATAACCTAAACTTAAAGTGAGAGATCTAAAT
CCAGACAACTGAAATTCTTTGCCCATCTTTAATATACTGCTAGTCACCAG
TGTTTATTGACCCAGCATAAAGATAAGGTTTTTGTCTTTAGGTAGCTCAG
AATACTAAATATAAATAANATATTTGTTTTCATAGACTCAAATGTAGATG
AGATTAACTGTTTTATGTGGACCAAAAATGGTGACCCTGAAAGATGAGAA
CTAAGAAAATTATAATGCATGGAATTTTTCATTAAATCCCCAAAATTCTA
AAGAAGGGAAACCTTTTTATGAAAAGGGGACTTTATTTTTCTCCCACCTT
TTCTTAAAAATTTTGTGTTAGAATTTTTGTCGGCCCCCCCCTTTCTTTCA
CGCTATTCGCTCTCGTTCTCTCAN

NNTTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATTTCTTTCTTATTTCTT
CCTTGACCCAGAAAATTGAGTTGCGAGTTGTTCAGTTTCTGTGCATATTT
AACCTTTCTGTTGTTCTGTTGTTGTTGAAGTCCATATTTAATCCATGGTG
GTCTAATAAGATAAAGGTTTAAACTTCTTGCATCTGTGAAACTTGCTTTG
TGACTGAGGATATGGTCAGTTTGGGGTAAAGTTCCTTGAGTTGCTGTGAA
GAATCTATCTTCTTTTGTGTTTGGGTGAAATGTTCTATTGATATCTCTTA
AGTCAATTTGAGTTGTAATATCCATCAATTTCCATTTTGTTTCTGTCTGG
ATGACCTGCCCATTGTTGAAAGAAGAATATTGAAGTCTCTCACTATTAGT
GTGGGGGTTCTATATGTGATTTTAGCTTTAGTAAGGTTTATTTTTATACT
GTTGAATGCCCTTGCATTTGGAGGCAAAATGTTCCGAATTGAAAATTCTT
CTTGGAAAAATTTTCCTTTGTACCCAATATATTGGATTTCCTTAGGATTT
CTGGTCGGCTTTTGTGAGGGGAAAATCTTTAATTGCCATCGTAAAAATAA
GTAGCTTTAATCGTTTTATATTACCCTCTATTCGTTTACATAATGTCGAC
CTTCTCTCTATGTGCAATAACCGATGCACTTTTTTCTTTCTTTACCCATT
CTTTCTATTCTTTTG

Query= MSMg01no362_k24.b1 MSMg01no362_k24.b1 CHROMAT_FILE:
MSMg01no362_k24.b1 PHD_FILE: MSMg01no362_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:09 2005
         (445 letters)



>mm_chr3_78177658_78178504
          Length = 847

 Score =  779 bits (403), Expect = 0.0
 Identities = 433/443 (97%), Gaps = 2/443 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttataaacaggaagcaacagtcttataccgattgcctgcttttagtacttt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaattcatcttagaaacaggaagcaacagtcttataccgattgcctgcttttagtacttt 588

                                                                       
Query: 65  atatcaattctactcacttttaagactataatggctgtattttccactgtatctccc-tt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 587 atatcaattctactcacttttaagactataatggctgtattttccactgtatctcccttt 528

                                                                       
Query: 124 ttttgtggcttttaaagacagaaaaggatcacaacgtgacttccttctatttgtgaaatt 183
           ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 527 ttttgtggcttttaatgacaggaaaggatcacaatgtgacttccttctatttgtgaaatt 468

                                                                       
Query: 184 cctcagatacaacattatttacaa-tttttttctgaatctgaatttttaagattttagga 242
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 467 cctcagatacaacattatttacaattttttttctgaatctgaatttttaagattttagga 408

                                                                       
Query: 243 taatgtggggttcattcttatagaagcataagcgcactacaaacagaacgagagaataat 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 407 taatgtggggttcattcttatagaagcataagcacactacaaacagaacgagagaataat 348

                                                                       
Query: 303 gggtttattttgacaaaataacctaaacttaaagtgagagatctaaatccagacaactga 362
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 347 gggtttattttgacaaaataacctaaacttaaagtgagagatgtaaatccagacaactga 288

                                                                       
Query: 363 aattctttgcccatctttaatatactgctagtcaccagtgtttattgacccagcataaag 422
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 287 aattctttgcccatctttaatatactgctagttaccagtgtttattgacccagcgtaaag 228

                                  
Query: 423 ataaggtttttgtctttaggtag 445
           |||||||||||||||||||||||
Sbjct: 227 ataaggtttttgtctttaggtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 847
Length adjustment: 10
Effective length of query: 435
Effective length of database: 837
Effective search space:   364095
Effective search space used:   364095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)