TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACTTCATAGGANAATGTTTTAATTCGATAAATATAAAGCAAAAT
AATTGTATGAAAAGTAAAACCAATTTTACTTTGAAAATAGGACATTGAGG
ACCTCAGTTTTGACATACTTTTATGGTTTATTTTTTTATCAGCCACAATG
TACATTTACCAAGTCTGTGGCTGATTTTAATAAAGTAAATAAATTATTTT
TAAAAACTGTATAAATATTTTGTAATTATTTATAGATCAAAGTATTTATG
AATTAGACCACGCTTGGCTTTCACTGTTATATTTATAATAGTTATATTTC
ATGCTAATATATATGATTTCATTAACACTGTGAAGTTGAACCAAAGCTGC
ACTTCTGTATTTTTATTTTTATTATTTTTTTAACAGTAAACATTTAAGTC
AAAATGAGAACCATCACATTAAAGCAAATTCATACCATGAAGTCCCCTTG
CACAAACAATTTTCTTAGTTATTCCTTCATTCAGGATTTACTCAGTTGGC
CAGGACATTAAAACACAACAATGTGACAACTGTTGCCTTTTAATAAGTCC
CAGAAAGAAATGCAGTATGCATTCAAGTAATGCAATCACTGTGGGCCACA
TTCATCTGATGTTGTTTTAAATGAAAGAGTACACATTACATTAATTATAT
TTGGTTATTTTAAGAAGAGAACCTTTGCGCAGAATTCTAATTAA

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATTCCTATACCCCATTTT
TTGACTGTGTTGTTTGATTTTATTTGGTGGTTAGTTTCTTGAGTTCTTTT
TAGCCAATTATTGAATATGGAGTTAGTGTAGATAGCTTGCTGGTTTATCC
TATTAACTACATCCTTTGCCTTACAGAAGCTTTACAGTTTCGTGAGGTCC
ATTTATCAATTCTTGATCTTAGAGAATGAGCCATTGGAGTTCTGTTCAGA
AAATTTCTCCCTGTGCTAATGAGTTCAAGGCTCTTTCGCACTTTCTCTTC
TATTAGATTCAGTGTATCTGGTTTTATATTGAGGTCCTTGATCCAATTGA
ACTTGAGCTTTGTGCAAGGTGACAAATATGTATCTATTTTCATTTTTCTA
CATACAGACTGCCAGTTAGAATAGCACCATTTATTGAAGATGCCTTTTTT
TCTTTTGTATTTTTTTCTTCTTTGNCAACGATCAAGTGTCCATTATAACA
GTCAATATCAAATTAAATGGAGAGATACTTGCAGAAATCCCACCAAAAAC
AGGGAGAAAACAAGGAATCCCACTCTTCCCATATATATTCAATATAGAAC
TTGGAAGTCTAGCTAGAGCCATGAGACACCCAAAGAAGATCTACTGAATA
CACTTTGTGCAAAGAAGAATAGGTTTCACTATTTTGCAGATGACCTGATA
TTATTCCTATAGCGGGC

Query= MSMg01no362_n13.b1 MSMg01no362_n13.b1 CHROMAT_FILE:
MSMg01no362_n13.b1 PHD_FILE: MSMg01no362_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:22 2005
         (600 letters)



>mm_chr3_48319288_48320287
          Length = 1000

 Score = 1147 bits (593), Expect = 0.0
 Identities = 595/596 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacttcatagganaatgttttaattcgataaatataaagcaaaataattgtat 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaattcacacttcataggaaaatgttttaattcgataaatataaagcaaaataattgtat 740

                                                                       
Query: 65  gaaaagtaaaaccaattttactttgaaaataggacattgaggacctcagttttgacatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaaagtaaaaccaattttactttgaaaataggacattgaggacctcagttttgacatac 680

                                                                       
Query: 125 ttttatggtttatttttttatcagccacaatgtacatttaccaagtctgtggctgatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttttatggtttatttttttatcagccacaatgtacatttaccaagtctgtggctgatttt 620

                                                                       
Query: 185 aataaagtaaataaattatttttaaaaactgtataaatattttgtaattatttatagatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aataaagtaaataaattatttttaaaaactgtataaatattttgtaattatttatagatc 560

                                                                       
Query: 245 aaagtatttatgaattagaccacgcttggctttcactgttatatttataatagttatatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaagtatttatgaattagaccacgcttggctttcactgttatatttataatagttatatt 500

                                                                       
Query: 305 tcatgctaatatatatgatttcattaacactgtgaagttgaaccaaagctgcacttctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcatgctaatatatatgatttcattaacactgtgaagttgaaccaaagctgcacttctgt 440

                                                                       
Query: 365 atttttatttttattatttttttaacagtaaacatttaagtcaaaatgagaaccatcaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atttttatttttattatttttttaacagtaaacatttaagtcaaaatgagaaccatcaca 380

                                                                       
Query: 425 ttaaagcaaattcataccatgaagtccccttgcacaaacaattttcttagttattccttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttaaagcaaattcataccatgaagtccccttgcacaaacaattttcttagttattccttc 320

                                                                       
Query: 485 attcaggatttactcagttggccaggacattaaaacacaacaatgtgacaactgttgcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attcaggatttactcagttggccaggacattaaaacacaacaatgtgacaactgttgcct 260

                                                                   
Query: 545 tttaataagtcccagaaagaaatgcagtatgcattcaagtaatgcaatcactgtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttaataagtcccagaaagaaatgcagtatgcattcaagtaatgcaatcactgtgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)