Query= MSMg01no363_b21.b1 MSMg01no363_b21.b1 CHROMAT_FILE:
MSMg01no363_b21.b1 PHD_FILE: MSMg01no363_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:43 2005
(491 letters)
>mm_chr3_145045056_145045944
Length = 889
Score = 915 bits (473), Expect = 0.0
Identities = 483/487 (99%), Gaps = 2/487 (0%)
Strand = Plus / Minus
Query: 5 gaattcatggtcagcctaggctgtaggagatcctgcaccaaggaaaaaagttgaactgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattcatggtcagcctaggctgtaggagatcctgcaccaaggaaaaaagttgaactgta 630
Query: 65 taatataattccattcgttacacataaattatacctcactaaaaccggcgaggaggcagc 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taatataattccattcgttatacataaattatacctcactaaaaccggcgaggaggcagc 570
Query: 125 taggattggatggtttagataaacatgctctgttggtacctagtgtgtggtcagaagacc 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 taggattggatggattagataaacatgctctgttggtacctagtgtgtggtcagaagacc 510
Query: 185 tttcgagaaaaaaaaaaagtcttatttcctgaacttcttcccatgtaaaactcagtgaag 244
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttcgag--aaaaaaaaagtcttatttcctgaacttcttcccatgtaaaactcagtgaag 452
Query: 245 tttgaattttgaatgatttcacctgtaataccagcacgatcatcattttattcacgtgtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tttgaattttgaatgatttcacctgtaataccagcacgatcatcattttattcacgtgtt 392
Query: 305 tagaaaaatatggttttagacactaaatacctaccatctattagggatttctctggctac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagaaaaatatggttttagacactaaatacctaccatctattagggatttctctggctac 332
Query: 365 tttaattaataaatgtcagttgaccggcttaataccactgaatgtaccaggcactattct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttaattaataaatgtcagttgaccggcttaataccactgaatgtaccaggcactattct 272
Query: 425 tatcactgggtgttctccggggcaaaggttctggattcatggatacaggtctgtagactt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tatcactgggtgttctccggggcaaaggttctggattcatggatacaggtctgtagactt 212
Query: 485 tatctca 491
|||||||
Sbjct: 211 tatctca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 889
Length adjustment: 10
Effective length of query: 481
Effective length of database: 879
Effective search space: 422799
Effective search space used: 422799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_b21.g1 MSMg01no363_b21.g1 CHROMAT_FILE:
MSMg01no363_b21.g1 PHD_FILE: MSMg01no363_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:44 2005
(405 letters)
>mm_chr3_144896261_144897063
Length = 803
Score = 721 bits (373), Expect = 0.0
Identities = 396/405 (97%), Gaps = 4/405 (0%)
Strand = Plus / Plus
Query: 1 aaatgtcttcattgagccccttgaactaagcccatttctccatctaatggatggtcgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgtcttcattgagccccttgaactaagcccatttctccatctaatggatggtcgcag 260
Query: 61 gaactacctcataggatgatggaaacatagaaagtgtagaccctcggtcactgaaggaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gaactacctcataggatgatggaaacatagaaagtgtagaccctcggtcactaaaggaag 320
Query: 121 catcatagcttctaggagatatttgtgaattgactgaatgtgttgaatgaatatacttat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcatagcttctaggagatatttgtgaattgactgaatgtgttgaatgaatatacttag 380
Query: 181 ggatggttttttttagatgaaacactgtgacaagggtgacttaagggggaaagtcatctt 240
|||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 381 ggat--ttttttttagatgaaacactgtgacaagggtgac--aaggggaaaagtcatctt 436
Query: 241 ttctcacagttcaccacagcagcaggagcttgacaccgctggtcccatcacagacatgaa 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 437 ttctcacagttcaccacagcagcaggagcttgacacagctggtcccatcacagacatgaa 496
Query: 301 gaggaaacagaagggagaatgccttgttgatgctcagcctctctttgattcctatttaac 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggggaaacagaagggagaatgccttgttgatgctcagcctctctttgattcctatttaac 556
Query: 361 aaggtccaggattctagtccagtgagcaggtcttactgcctcaat 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaggtccaggattctagtccagtgagcaggtcttactgcctcaat 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 803
Length adjustment: 9
Effective length of query: 396
Effective length of database: 794
Effective search space: 314424
Effective search space used: 314424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
