Query= MSMg01no363_d08.b1 MSMg01no363_d08.b1 CHROMAT_FILE:
MSMg01no363_d08.b1 PHD_FILE: MSMg01no363_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:51 2005
(482 letters)
>mm_chr3_88166308_88167188
Length = 881
Score = 909 bits (470), Expect = 0.0
Identities = 479/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 1 aagaaactctgtctggaaaaaaccaaaaacaaacccaaaacaaataaacccagacaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagaaactctgtctggaaaaaaccaaaaacaaacccaaaacaaataaacccagacaaaac 490
Query: 61 aacatccaaaccaaaccaaaaacttgggtacaattctggcaatatgtattatctttgctg 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 489 aacatccaaaccaaaccaaaaacttgggtacaagtctggcaatatgtattatctatgctg 430
Query: 121 tgcgaactcctatctgcctaaatggtcagtctgtttctgtttaaattaagtgtaacctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgcgaactcctatctgcctaaatggtcagtctgtttctgtttaaattaagtgtaacctgg 370
Query: 181 gacaggacctgaaaggaacttaaggacaatgtttgcggcatgcataagcataaagtgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gacaggacctgaaaggaacttaaggacaatgtttgcggcatgcataagcataaagtgtga 310
Query: 241 gtatttcctgttccaaggtcaacgtcgtttgtgttttgcctggataaatccttacaatgt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtatttcctgtt-caaggtcaacgtcgtttgtgttttgcctggataaatccttacaatgt 251
Query: 301 atatgtctggtgcaaatggaagtcagaagtgggagatggcaccagattccctagaaacgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atatgtctggtgcaaatggaagtcagaagtgggagatggcaccagattccctagaaacgg 191
Query: 361 gactgtggatgactgtgagccaccatgtcgtgctgggaattgaaatccgtcctctgcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gactgtggatgactgtgagccaccatgtcgtgctgggaattgaaatccgtcctctgcaag 131
Query: 421 agcaacaagtgcttttagccactaagtcatctctccagccccatcaaggttgactctctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agcaacaagtgcttttagccactaagtcatctctccagccccatcaaggttgactctctt 71
Query: 481 cc 482
||
Sbjct: 70 cc 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_d08.g1 MSMg01no363_d08.g1 CHROMAT_FILE:
MSMg01no363_d08.g1 PHD_FILE: MSMg01no363_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:51 2005
(338 letters)
>mm_chr3_87975506_87976246
Length = 741
Score = 623 bits (322), Expect = 0.0
Identities = 336/342 (98%), Gaps = 5/342 (1%)
Strand = Plus / Plus
Query: 1 tcta-ccccattcaagtcccagaaagagggaagaagggagggatgggccagccaagagct 59
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacccccattcaagtcccagaaagagggaagaagggagggatgggccagccaagagct 260
Query: 60 gacccgtccccaaacttgacaatcacccacactcctggctcctgggtctgggtgagtcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccgtccccaaacttgacaatcacccacactcctggctcctgggtctgggtgagtcca 320
Query: 120 agtgtgtggctgttggtttgttttcattatttctttccgtgctgtacggtgatgctttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtgtggctgttggtttgttttcattatttctttccgtgctgtacggtgatgctttct 380
Query: 180 agtattctgcacattaagaaaagtcctcgagattcttacgagtttggtttgaaaactctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtattctgcacattaagaaaagtcctcgagattcttacgagtttggtttgaaaactctt 440
Query: 240 tctctatatttgttgtaaagaggtttactattaaaagaaaaaaaaaaa---catgtttct 296
|| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 441 tcactatatttgttgtaaagaggtttactattaaaag-aaaaaaaaaaaaacatgtttct 499
Query: 297 gatacctcagtttgggttttgatttctttggtgcggcgagga 338
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatacctcagtttgggttttgatttctttggtgcggcgagga 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 741
Length adjustment: 9
Effective length of query: 329
Effective length of database: 732
Effective search space: 240828
Effective search space used: 240828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
