BAC Information

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BAC

Clone NameMSMg01-363I06
Chromosome3 (Build37)
Map Location 150,661,907 - 150,843,300
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363I06.T7 (MSMg01no363_i06.b1)MSMg01-363I06.TJ (MSMg01no363_i06.g1)
ACCAG471937AG471938
length748743
length of high quality
(start - end)		563 (41 - 603)597 (72 - 668)
definitionCHROMAT_FILE: MSMg01no363_i06.b1 PHD_FILE: MSMg01no363_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:15 2005CHROMAT_FILE: MSMg01no363_i06.g1 PHD_FILE: MSMg01no363_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,842,931 - 150,843,300)(150,661,907 - 150,662,503)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACATCCAATTGCAGAAGAAAACTGACTGGGCTCTCTAGGGATGTCTGCA
TGTTTAAGCAAAGGTTAACTCAATGACCTGGATGAATGAAGCAAATTATT
TTGTCTTACACTTCCCTTCTCTCTTTAAAGGCATGAAAGCCATATGTACA
TCTAGATCAATGTTTTTCAACCTTCTTAATGCTGTGACCCTTTAATACAG
TGTCTCATGTCATAGTGATCCACAACCATAAAATTGTGTCATAGCCATTT
CATAACTGTAATTTTGCTACTGTTATGAATTGTAATATAAATACCTGATA
TGCAGAATATCTGATATGTGACCTCCATGAAAGGATCTGTCTACTTCTCA
AAGGAGTTGTGACCCATAGATTGAGAATGGTTGATTCAGAGAGATGGTGT
ATATACCTTCATGGTTGGTTATGAGATGCCTTAGACTCAATGAATGTCTG
GAAGTTGATTTCTTCTCTCATTGTCGTAGGCATTATCTTTTGATAGGCTT
TGAACTCAAAGTCGGTTTACCAGAGTGTCCTCACTTCCTCTATACTTCAA
GTAGATTTCCTTTTTACTTTCTCATTTTTATTAATTGTTTGAGAATTTTG
TACATTTTTGTGAATATTTATCTCTTCACCCTTACCCGGATCCATGTTAC
CCTTCCTTATGCCCCCAAAATCCCTCTTTCCCTCCATCCCTCTCTTTT

NNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCTCGAGGAATTCTTGTGTGGTAAGAAAAGAGTGAGA
AAGACTGCTGGAAGACAGAGGTGATGTAACTGACTCAGTTATGAAGAATG
GCCAACAAGAATCCTGCCAGAAGACATATTTCACTTTGTCCATAATTTTC
TAGTGAAATATCATATTAAACTACTGATTTCATGTTTCAGCAATGATCTA
CATACAATAAAATATGTGGAAAAGACATCTTATCATTCAAACCCTTCTTG
AGAGCTATTCCTGAGATTTTTTTTATAAGATTTGCACATTTTCCCCTTAC
CTTAACTTTCCCTTGCCTCATAAATATCTCTTTGGTCAATGTTCTAAGTT
TTCTGATTATATAGGGACTTAGGTTAGTGTGTCCTTCACAGAATGTTGAA
GAGTTAAGTACAGTTTTATTTCAGCTGCAAGACTTTCTATGTAGTTGGCA
TTTTTGAGTTTTCAAAGAATAAGTTTCTTCCAAATGGCTTATATTTATCT
TTAGAAACAATTTAAAAGGAAAATAAATTTGTCATAATCAGGTCATCCAG
ACATAGTGCTGAAAGCATTTAATATCTGATCTATTCTGTGAAATAAGACA
CAACGCTGGCTCTGCTATTAAATATCACATAATCGCCTTAGTTAAAGAAG
TCGATTTTAGTGACTTGAGCTTCATATCTTAAGGAAAAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_i06.b1 MSMg01no363_i06.b1 CHROMAT_FILE:
MSMg01no363_i06.b1 PHD_FILE: MSMg01no363_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:15 2005
         (563 letters)



>mm_chr3_150842338_150843300
          Length = 963

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 194 gtgaccctttaatacagtgtctcatgtcatagtgatccacaaccataaaattgtgtcata 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gtgaccctttaatacagtgtctcatgtcatagtgatccacaaccataaaattgtgtcata 904

                                                                       
Query: 254 gccatttcataactgtaattttgctactgttatgaattgtaatataaatacctgatatgc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gccatttcataactgtaattttgctactgttatgaattgtaatataaatacctgatatgc 844

                                                                       
Query: 314 agaatatctgatatgtgacctccatgaaaggatctgtctacttctcaaaggagttgtgac 373
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 agaatatctgatatgtgagctccatgaaaggatctgtctacttctcaaaggagttgtgac 784

                                                                       
Query: 374 ccatagattgagaatggttgattcagagagatggtgtatataccttcatggttggttatg 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ccatagattgagaatggttgattcagagagatggtgtatataccttcatggttggttatg 724

                                                                       
Query: 434 agatgccttagactcaatgaatgtctggaagttgatttcttctctcattgtcgtaggcat 493
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 723 agatgccttagactcaatgaatgtctggaggttgatttcttctctcattgtcgtaggcat 664

                                                                       
Query: 494 tatcttttgataggctttgaactcaaagtcggtttaccagagtgtcctcacttcctctat 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tatcttttgataggctttgaactcaaagtcggtttaccagagtgtcctcacttcctctat 604

                     
Query: 554 acttcaagta 563
           ||||||||||
Sbjct: 603 acttcaagta 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_i06.g1 MSMg01no363_i06.g1 CHROMAT_FILE:
MSMg01no363_i06.g1 PHD_FILE: MSMg01no363_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:15 2005
         (597 letters)



>mm_chr3_150661707_150662703
          Length = 997

 Score = 1093 bits (565), Expect = 0.0
 Identities = 589/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttgtgtggtaagaaaagagtgagaaagactgctggaagacagaggtgatgtaact 60
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aattcttgtgtggtaagagaagagtgaaaaagactgctggaagacagaggtgatgtaact 260

                                                                       
Query: 61  gactcagttatgaagaatggccaacaagaatcctgccagaagacatatttcactttgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactcagttatgaagaatggccaacaagaatcctgccagaagacatatttcactttgtcc 320

                                                                       
Query: 121 ataattttctagtgaaatatcatattaaactactgatttcatgtttcagcaatgatctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataattttctagtgaaatatcatattaaactactgatttcatgtttcagcaatgatctac 380

                                                                       
Query: 181 atacaataaaatatgtggaaaagacatcttatcattcaaacccttcttgagagctattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaataaaatatgtggaaaagacatcttatcattcaaacccttcttgagagctattcc 440

                                                                       
Query: 241 tgagattttttttataagatttgcacattttccccttaccttaactttcccttgcctcat 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagattaaatttataagatttgcacattttccccttaccttaactttcccttgcctcat 500

                                                                       
Query: 301 aaatatctctttggtcaatgttctaagttttctgattatatagggacttaggttagtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatatctctttggtcaatgttctaagttttctgattatatagggacttaggttagtgtg 560

                                                                       
Query: 361 tccttcacagaatgttgaagagttaagtacagttttatttcagctgcaagactttctatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tccttcacagaatgttgaagagttaagtacagttttatttcagctgcaagactttctgtg 620

                                                                       
Query: 421 tagttggcatttttgagttttcaaagaataagtttcttccaaatggcttatatttatctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttggcatttttgagttttcaaagaataagtttcttccaaatggcttatatttatctt 680

                                                                       
Query: 481 tagaaacaatttaaaaggaaaataaatttgtcataatcaggtcatccagacatagtgctg 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tagaaacaatttaaaaggaaaataaatctgtcataatcaggtcatccagacatagtgctg 740

                                                                    
Query: 541 aaagcatttaatatctgatctattctgtgaaataagacacaacgctggctctgctat 597
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 aaagcatttaatatctgatctattctgtgaaataagacacaacactggctctgctat 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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