BAC Information

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BAC

Clone NameMSMg01-363M08
Chromosome3 (Build37)
Map Location 100,909,624 - 101,104,741
singlet/doubletdoublet
Overlap genePtgfrn, LOC668578, LOC668583, LOC669017, Cd2
Upstream geneSpag17, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2
Downstream geneLOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363M08.T7 (MSMg01no363_m08.b1)MSMg01-363M08.TJ (MSMg01no363_m08.g1)
ACCAG472128AG472129
length761743
length of high quality
(start - end)
473 (41 - 513)282 (331 - 612)
definitionCHROMAT_FILE: MSMg01no363_m08.b1 PHD_FILE: MSMg01no363_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:35 2005CHROMAT_FILE: MSMg01no363_m08.g1 PHD_FILE: MSMg01no363_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,909,624 - 100,910,093)(101,104,460 - 101,104,741)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTTAACATGCCTGAAATAAGTGCCAAGAAATCTCTGAAGACCACAGCAC
TTCAAAGGCTGTTTAAGCTAGAGGGATTCACGCGTGTTTCTCCTGCGAGC
CTTCCTCCTGACGCGGTGCCCTGTGGAGCAGCAGCAGGCTTTGTCTGAGC
CCCATTCCTCTGAGCGGGCAATGAGGACCTGCAAGGTTGCAGGTTGTCAC
ATCTGAGAGGTGCATGCTGACACCATTACTCCCTTCTGCATTGCACCTGG
GCCACACACACACCCCTGTTCTTATTTTTAATTCCAGCTTTGTATTCTGA
CCACGATCATCTTTTCTTCATCTAAATCTCAAACAATGGGCAGCACGCGG
TCACAGTGAACAACGGTCAGCTGATCCTTAGCACCCGCGGGATGGAGTCC
TGCTATGACTGAACATGTTGTTTCACGACTCTGGGCACCTAGTTCCTCAT
CATCTATAAGGAGAAAATAACTGAGCCTTTCCCAAGATCTGAATGACTGA
CTGATCCTGACTCCTCCGTGACATTTACTGTTGCCCTGTACCTGCCAGGT
GTACAGTAGGCCTTTCTGAAATCCTCATATAATAACCTGGCTGAGGTGTA
CCTTCCCTTTAATTCGTATAAATCCTTCTATTTATTCCTCTAATTCTCCC
ACTTTTCCACCCACTAATTTGTCGCTGATCTGCCTTTTCTTCCTGTTCTT
GTAATCTTCTC
NNNNNNCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACACAAAAAATTCAGTTAAGATTTGCTTT
AAACGTGGGCAGATGAACAGCTTAGCTTTGGCTGGGTTTAAGTGACATCT
CCATAGCAGACGCGAGTGCACCTGCCCGGCTGAGTCCCAAGATTCTTATA
TATCTCTGTTCTCCTTGGATCCTCGTGTAGTTTTGCAAGACACACGCGGT
CCACGCTGCCTGCCCCTCACGTGACTGAACGTGAGTGTGGTCGGGCTAAA
CAGCAGAGCCCCTGTTGCTTTGTTTTTTTTCCACAGTTCTGTTTCTGCAT
CTCTATCCACAGTCTCACGGCTTCACCATGTGGCTCTCCCCAACAGCCCG
AGGGGAACACAATGAAACCCTGTCGCTTGCAGTCTCTATTTATCTGGCAT
TTCCAATCCCCTCTCCTCGGAAAGCCAATAACATTCTGAATTTTTCCCAC
AAGAGATTGTGGGCTCTTTGGGAAGGAGAAAAACAAGCAGATGGTTCTCA
GGAAACCGGATCTGTGCTGTGAGATCAAAATTTCCCCTTCTGTAAACCAG
CCCTTTGCAGAACGTTCTTCAAACCGCGGACAACAGACCTTCATGTGCTC
CAGCCTTAAGTGGCCACGGTATGCAGCAGACTCCTCTGCCAGCCCCTCGC
TCCCAGCCAGAGCAGTTTGCCCTTCCTCAGCTAGTCCCCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_m08.b1 MSMg01no363_m08.b1 CHROMAT_FILE:
MSMg01no363_m08.b1 PHD_FILE: MSMg01no363_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:35 2005
         (473 letters)



>mm_chr3_100909421_100910293
          Length = 873

 Score =  847 bits (438), Expect = 0.0
 Identities = 462/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttaacatgcctgaaataagtgccaagaaatctctgaagaccacagcacttc 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttaacaagactgaaataagtgccaagaaatctctgaagaccacagcacttc 263

                                                                       
Query: 64  aaaggctgtttaagctagagggattcacgcgtgtttctcctgcgagccttcctcctgacg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaggctgtttaagctagagggattcacgcgtgtttctcctgcgagccttcctcctgacg 323

                                                                       
Query: 124 cggtgccctgtggagcagcagcaggctttgtctgagccccattcctctgagcgggcaatg 183
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cggtgccctgtggagcagcaacaggctttgtctgagccccattcctctgagcgggcaatg 383

                                                                       
Query: 184 aggacctgcaaggttgcaggttgtcacatctgagaggtgcatgctgacaccattactccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggacctgcaaggttgcaggttgtcacatctgagaggtgcatgctgacaccattactccc 443

                                                                       
Query: 244 ttctgcattgcacctgggccacacacacacccctgttcttatttttaattccagctttgt 303
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 444 ttctgcattgcacctgggccacacacacacccctgatcctatttttaattccagctttgt 503

                                                                       
Query: 304 attctgaccacgatcatcttttcttcatctaaatctcaaacaatgggcagcacgcggtca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 504 attctgaccacgatcatcttttcttcatctaaatctcaaacaatgggcagcacacgggca 563

                                                                       
Query: 364 cagtgaacaacggtcagctgatccttagcacccgcgggatggagtcctgctatgactgaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtgaacaacggtcagctgatccttagcacccgcgggatggagtcctgctatgactgaa 623

                                                             
Query: 424 catgttgtttcacgactctgggcacctagttcctcatcatctataaggag 473
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 catgttgtttcacaactctgggcacctagttcctcatcatctataaggag 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no363_m08.g1 MSMg01no363_m08.g1 CHROMAT_FILE:
MSMg01no363_m08.g1 PHD_FILE: MSMg01no363_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:36 2005
         (282 letters)



>mm_chr3_101104260_101104941
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacagttctgtttctgcatctctatccacagtctcacggcttcaccatgtggctctccc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccacagttctgtttctgcatttctatccacagtctcacggcttcaccatgtggctctccc 423

                                                                       
Query: 61  caacagcccgaggggaacacaatgaaaccctgtcgcttgcagtctctatttatctggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caacagcccgaggggaacacaatgaaaccctgtcgcttgcagtctctatttatctggcat 363

                                                                       
Query: 121 ttccaatcccctctcctcggaaagccaataacattctgaatttttcccacaagagattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttccaatcccctctcctcggaaagccaataacattctgaatttttcccacaagagattgt 303

                                                                       
Query: 181 gggctctttgggaaggagaaaaacaagcagatggttctcaggaaaccggatctgtgctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gggctctttgggaaggagaaaaacaagcagatggttctcaggaaaccggatctgtgctgt 243

                                                     
Query: 241 gagatcaaaatttccccttctgtaaaccagccctttgcagaa 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gagatcaaaatttccccttctgtaaaccagccctttgcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)