BAC Information

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BAC

Clone NameMSMg01-364C23
Chromosome3 (Build37)
Map Location 146,755,652 - 147,001,865
singlet/doubletdoublet
Overlap genePpia-ps3_1528.1
Upstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364C23.T7 (MSMg01no364_c23.b1)MSMg01-364C23.TJ (MSMg01no364_c23.g1)
ACCAG472443AG472444
length772800
length of high quality
(start - end)		437 (55 - 491)333 (83 - 415)
definitionCHROMAT_FILE: MSMg01no364_c23.b1 PHD_FILE: MSMg01no364_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:12 2005CHROMAT_FILE: MSMg01no364_c23.g1 PHD_FILE: MSMg01no364_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,001,433 - 147,001,865)(146,755,652 - 146,755,984)
sequence
NNGGGGCTNTTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAACAGTTTTGGAGACTTACTTTTCTAAAAAGGAACA
GGTGTTGCAAGAAAAATTCCCACAAAGCAATAAATAGTTTTATATCTGCA
AGGGCATTTAGTAATAATGAGGAGATTTCATGGATCTTATGAAAGGCACC
AGAGGGAATTACTAACAGAAGAAATATATAAAGACCTTATTTCAAGAAAG
TATATTATTATTAGAATTTGCCAAGTCTCTTGTATGAGGTACCTGAACAA
AGATCCAGTTAGCATGTTTAAAAGCATCTAGGTGATGCAGAGAAGGGGTT
CACCTGTATCAGTCTCTCACATAGCCTCAGGCAAATCAGATGAAAAGGTT
CACTTGGGTACATATTTCCAGGTGAGAAGGAAAAAGAACTTTCATCCTTA
CTTAGATGCAATGGAGTTGCAGACCCTAATCTCCTCGGAAGACCATGGCT
AACACTGTCTCCCTCACTGCCTTAAGGCCCCTGCCTTGAATCCTTCTAGC
ACACTCTACAGGGATTTCCGTATGAGAAGTTCTCTCACGTAAACTCCGGG
TCCATAAACTTTTCCACTGGAAAAACATCAGGGGGTTGGCCTCCTTTTTA
ACCTTGAGAAAACATAAAAATTAACAAGGGCCGAAAGTGCCACTTATTTA
TGGTTGTTGTTGTGGGGGGCCCCGCGCCGCCGTTACGTTCATCAATCACA
CGATTTTATATTTCTAATCCCA

NNTTTCTTCGATGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTGCAGATGCCTGG
AGTGGCAAGTCAATACATGTCTGTGTTAGCTACAGTCCAATGCCTGCTCT
CACAATTAGGGGGCAGAAGAGCAATTGGAATTGGCGTGGACTGTAATTAG
CAAGGAAAATGGTTAGCTGGGGGTGTTTAATCAAATGAAAGTCAAAAATG
GTAGGGAACTGCATTTTTGTGTAGATTTTGAAGCTAGACATTCTTAAGAT
GAAATTGTCAAATAAACCCAGTCTGGCTTTGTGTTGAAATTCATCAAAAA
TGGCTTTGTTTGCCTCCCTTTCTGATTGCAACTGTCAATCACCTGTCCTT
AGTTGAATAATTTGCATGATACTCAGAGCCCATTTTGTGAATCAAATGTT
CAAAAAACAATGCGGGAAACCGAATAATTAAATTCCTCCTGTTAGGCCTT
ACCGTCCTTGTTTCATATCCTTATTTAACTTTTTTCCCTATGGTCCTTAA
CTTCCCCTTCTCATTTCTATGACCCCCTTTTTCATGTGTAACCTTTGGCG
CAACTGTCTCATTAATTTTTTCTCCAATATTCTCAGTCTTCTCTTTTATC
TTCCTATTTATTATTCTTTTTCTCCCACTCCCTTCTTTTCTTTATTATTT
TCTCTCTCGAATCTCCTCTCCTTTCCATATTCCTCCATTTTATTTCTCTC
ACCTCCTTATATTTTCCCCTTGTTCTTCTCTACCCCCTCTTCTTTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_c23.b1 MSMg01no364_c23.b1 CHROMAT_FILE:
MSMg01no364_c23.b1 PHD_FILE: MSMg01no364_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:12 2005
         (437 letters)



>mm_chr3_147001229_147002065
          Length = 837

 Score =  830 bits (429), Expect = 0.0
 Identities = 432/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacagttttggagacttacttttctaaaaaggaacaggtgttgcaagaaaaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcaacagttttggagacttacttttctaaaaaggaacaggtgttgcaagaaaaatt 578

                                                                       
Query: 65  cccacaaagcaataaatagttttatatctgcaagggcatttagtaataatgaggagattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cccacaaagcaataaatagttttatatctgcaagggcatttagtaataatgaggagattt 518

                                                                       
Query: 125 catggatcttatgaaaggcaccagagggaattactaacagaagaaatatataaagacctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 catggatcttatgaaaggcaccagagggaattactaacagaagaaatatataaagacctt 458

                                                                       
Query: 185 atttcaagaaagtatattattattagaatttgccaagtctcttgtatgaggtacctgaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atttcaagaaagtatattattattagaatttgccaagtctcttgtatgaggtacctgaac 398

                                                                       
Query: 245 aaagatccagttagcatgtttaaaagcatctaggtgatgcagagaaggggttcacctgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaagatccagttagcatgtttaaaagcatctaggtgatgcagagaaggggttcacctgta 338

                                                                       
Query: 305 tcagtctctcacatagcctcaggcaaatcagatgaaaaggttcacttgggtacatatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcagtctctcacatagcctcaggcaaatcagatgaaaaggttcacttgggtacatatttc 278

                                                                       
Query: 365 caggtgagaaggaaaaagaactttcatccttacttagatgcaatggagttgcagacccta 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 277 caggtgagaaggaaaaagaactttcatccttacttagatgcaatgtagttgcagacccta 218

                        
Query: 425 atctcctcggaag 437
           |||||||||||||
Sbjct: 217 atctcctcggaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_c23.g1 MSMg01no364_c23.g1 CHROMAT_FILE:
MSMg01no364_c23.g1 PHD_FILE: MSMg01no364_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:12 2005
         (333 letters)



>mm_chr3_146755452_146756184
          Length = 733

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctgcagatgcctggagtggcaagtcaatacatgtctgtgttagctacagtccaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctgcagatgcctggagtggcaagtcaatacatgtctgtgttagctacagtccaatg 260

                                                                       
Query: 61  cctgctctcacaattagggggcagaagagcaattggaattggcgtggactgtaattagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgctctcacaattagggggcagaagagcaattggaattggcgtggactgtaattagca 320

                                                                       
Query: 121 aggaaaatggttagctgggggtgtttaatcaaatgaaagtcaaaaatggtagggaactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaatggttagctgggggtgtttaatcaaatgaaagtcaaaaatggtagggaactgc 380

                                                                       
Query: 181 atttttgtgtagattttgaagctagacattcttaagatgaaattgtcaaataaacccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttgtgtagattttgaagctagacattcttaagatgaaattgtcaaataaacccagt 440

                                                                       
Query: 241 ctggctttgtgttgaaattcatcaaaaatggctttgtttgcctccctttctgattgcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggctttgtgttgaaattcatcaaaaatggctttgtttgcctccctttctgattgcaac 500

                                            
Query: 301 tgtcaatcacctgtccttagttgaataatttgc 333
           |||||||||| |||||||| |||||||||||||
Sbjct: 501 tgtcaatcacttgtccttaattgaataatttgc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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