NAAATTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTGAAAATTTCAGTATGTTTGAGGGTAAAAAACTTT
TTCAGAAAAAAAAAAAAACTTCAATTTTAAGACAGATGAACCAGAATGCT
ATTAAATTTAGTTGTGTGTATTTTACCCTATTTGCAGATTTTTTTTTCAG
TAAGGAAGAGAGCTAGAAGCAATAAATTCTTACCAGAATAAAGACAGGCC
TGGCCTGTTACAGTTCCATGTCTGTCTAAATCACAGCTCAAGGACTTTAT
TAACCAAAAATAAGAAATAACACCTGTATCTGAATATTTCTGATGGTTCT
CCCTGTCTCAAAGTCTACAGAGTGGAGAGAACATAGTATAGCTGAGACTT
CTGTTATAGCAAGCAGTATGCATGCCTACTTTTTGTGCAAAGGAAAAAAA
CAACAACAAAAAAAAAAAACGATTTTCAGGAAGGCATAACTCATTCCTAT
CGGGCATTACTTCAACTTTTGAATTGTCCAGCTGCACAAGCAGCACAGGC
CAATGGGGAGAGTGAAAAAAAAAAATAAAACAGCCTGATCCTGAAAACTT
GGGTTCAAGGACGAATGGGAGCACAAAGTTTCCCGGAAACCCTTTCCCTA
CACTTCAGGGGGCAAATTAATGGACGAAAATTTGGAATAAATCCTCCGGG
CTGGCTACGTTTTATGTAAATGTTTCTCCCTATGTAAAGAATGGGGGAAT
TTCCCCCCCGGTGGCGCCCGAAACCCTATTACA

NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCATTGATTACATTCAATCA
CACCAACTCCCAGCTTCTTAACTCTGAGCTGCATCAAACTAACTGTTTGA
ACTCAACTGACCGACTAGAACCCAGATATCTGCATGCCTCTGTCTACTGA
GTGCTGGGATTAAAGGTGTGTACTACCATGCCTGGACCTATTTTTTTTGT
TGTTGTTTTTGTTTTGTTTTTTTACCTGAAACTTTCTCTATGCCAGGATT
GCCTTGGGAAAACAAAGGTCTGCTTACCTCTGTATCCTGGGATTAAAGGT
GTGTCTGTGTTTTAATGGAATCACAAAGACCTAGAAGGTCTTTGTATATG
ATCCCTTGCCAGAACAGCCATGCCGTTGGATTAAAATTGCTCTACATTTA
GGAAAATTATTAAGAGGCTTCTTTAGCTATGAAAACATGAACAGGCTACC
CCCTTTAATATTCTACCCCTCTTCCACGAATAATAGTGCATTACATCCAT
TTTAATCACTCCCTTTCTGGTTTCTTTACAACCCCTTTTCCATTAATCTC
CTTACATAACATCCGCCTTGGATTCTTCCTCCTTTTTTCTTTTTTACTTC
CCCAGTCTTTCTTTCTTTCTCTTACTCTTTGTCCCGTTTCCGTTTTTCCC
TCTTGTTTATTCTTCTATTCTCTTCTTTGCATTCTTCCTCCCCCTCTTCA
TTTCTCCTGTCCTCTCTTCTTCTTAATATCTCACTCCATTCTCAC

Query= MSMg01no364_d09.b1 MSMg01no364_d09.b1 CHROMAT_FILE:
MSMg01no364_d09.b1 PHD_FILE: MSMg01no364_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:14 2005
         (460 letters)



>mm_chr3_70359827_70360686
          Length = 860

 Score =  777 bits (402), Expect = 0.0
 Identities = 448/472 (94%), Gaps = 17/472 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgaaaatttcagtatgtttgagggtaaaaaactttttcagaaaaaaaaaaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaattcattgaaaattttagtatgtttgagggtaaaaaactttttcagaaaaaaaaaaaa 557

                                                                       
Query: 65  acttcaattttaagacagatgaaccagaatgctattaaatttagttgtgtgtattttacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acttcaattttaagacagatgaaccagaatgctattaaatttagttgtgtgtattttacc 497

                                                                       
Query: 125 ctatttgcagatttttttttcagtaaggaagagagctagaagcaataaattcttaccaga 184
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctatttgcaga-ctttttttcagtaaggaagagagctagaagcaataaattcttaccaga 438

                                                                       
Query: 185 ataaagacaggcctggcctgttacagttccatgtctgtctaaatcacagctcaaggactt 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 ataaagacaggcctggcctgttacagatccatgtctgtctaaatcacagctcaaggactt 378

                                                                       
Query: 245 tattaaccaaaaataagaaataacacctgtatctgaatatttctgatggttctccctgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tattaaccaaaaataagaaataacacctgtatctgaatatttctgatggttctccctgtc 318

                                                                       
Query: 305 tcaaagtctacagagtggagagaacatagtatagctgagacttctgttatagcaagcagt 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcaaagtccacagagtggagagaacatagtatagctgagacttctgttatagcaagcagt 258

                                                                       
Query: 365 atgcatgcctactttttgtgcaaaggaaaa-aa--acaacaacaaaaaaaaaaaa----- 416
           ||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||     
Sbjct: 257 atgcatgcctactctttgtgcaaaggaaaacaacaacaacaacaaaaaaaaaaaaaaaaa 198

                                                               
Query: 417 --------cgattttcaggaaggcataactcattcctatcgggcattacttc 460
                   |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 197 aaaaaaaacgattttcaggacggcataactcattcctattgggcattacttc 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)