BAC Information

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BAC

Clone NameMSMg01-364F07
Chromosome3 (Build37)
Map Location 97,113,747 - 97,113,995
singlet/doubletsinglet
Overlap genenone
Upstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
Downstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364F07.T7 (MSMg01no364_f07.b1)MSMg01-364F07.TJ (MSMg01no364_f07.g1)
ACCAG472554AG472555
length831760
length of high quality
(start - end)
260 (74 - 333)405 (73 - 477)
definitionCHROMAT_FILE: MSMg01no364_f07.b1 PHD_FILE: MSMg01no364_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:24 2005CHROMAT_FILE: MSMg01no364_f07.g1 PHD_FILE: MSMg01no364_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCCTGGCAAGTACCGTCAGATTGTGAAAGGCAGGTGTAGCTCCCCTG
ATGTTTTGAGTAGGTACTTGTTCAAATCATGTAACCTCTCTAGGAACCGT
TTCTCAAAGGAGTGATGTATAATTTCTCCTCCGTCGTCGCGGTGGTGAGG
GGGCGGATTCTGAGGAGGAGACACTGAGGGAGGAGGCAGGGAAAGCAATG
CCATCCTGGATCCGAGCTGGGGAGATCAAAGGATGGGGTGAGCCTCACCT
CTGGAGATGGAGGGGTGGGGGTGTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTCTTCTTCTTTNTGGGGGGGGGGGGGTGT
NTTTTTGTGTTTTGGTTTTTTTCCCCCCCTTTCCTTTCTGTTTTTCGCCT
TTTTCCTTGTTTCTCCTTCTCCCGTTGTTGTTTTCCTTTTTTGTTCGTTT
TGCTTTTCTTTTTTCCCTTTCGCTTTTTTATCTTTTTCTTCCTATTCTGC
TCTTTCTTTTTTGTGTTCTTTTTTGCTCTCTTGCTGTGCGCTGTACTGTC
CTTTGTGTTTTCGCGCCGTTCCGTACTTATATTTATTTTTTCCGTTAATT
TTTAGTTTTCCATTTGCTCCCTCTCATCTGTTTCGATGTGCTCTTTTGTT
ATTGTTTTTTTTTTACCCTTCTTGACTCAATTTCTTCCTTTTATCCTAGC
CATTCTTTTTCCTAGTTTCCGTATCGCTTTGCCTGTCTTTTTTTTCCGCT
GCTATTTCTTCTTTTTTTCAGTGTATTCACG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATCTCAGTTTCCCCTAGTAGCCCATG
AGAAAGCCCACTTGATCCAAAAATCCTCTTTTTGTCACATGTTATCTTGT
TTAAAATTCTTGTTCAGAATGTCTTAGTTAGAATTTCTATTGCTATGAAG
AGACACCATGACCAAGGTAACTCATAAAAGAAAATATTTAATTGAGATGG
CTTATAGTTTCAGAAGTCCATTATCATAATGGCAGAAAACATGGCAGCAT
GCAGGGAGACATGGTACTAGAGAAGGAACCGAGAGTTCTACATCTTGATC
TACAGTCAGCAGAAGGAGTCTTTGCATAGGAGACTACAAAGCCTGCCCCC
ACTGTGATACACTTCCTCTAACAAAGCCACACTAAGTTCATATGATCCTT
ATTTTATTTTATTGGGGGGGGGGTTNNTTTTNTNNTNNTGNNNNTTTTTT
GTGTTTTNTGTTGGTTTTGGGTTTTTNTTTTGTGTTGGTGTTNTTTTGGG
TGTTTGGTTTTTTTTNTGTTGTTTGTTTTTTTTTTTTGGTTTTTGTTGGT
TTGGTTTTGTTGTGTTTTGGTTGTTGTTGGGTTTTTTGTTTTTTTGTGGT
GTTGTTGTGTGTTTTTGTTTTTGTGTTTTTTGTTTGTTGTGGNTTGTTGT
TTTGTGGTTGTTGTGGGTGTGTTGTGTGTTTTGGTTTTTGGTTGTTTGTT
GTTTGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_f07.b1 MSMg01no364_f07.b1 CHROMAT_FILE:
MSMg01no364_f07.b1 PHD_FILE: MSMg01no364_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:24 2005
         (260 letters)



>mm_chr3_97113546_97114205
          Length = 660

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgtgaaaggcaggtgtagctcccctgatgttttgagtaggtacttgttcaaatcatgtaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtgaaaggcaggtgtagctcccctgatgttttgagtaggtacttgttcaaatcatgtaa 391

                                                                       
Query: 62  cctctctaggaaccgtttctcaaaggagtgatgtataatttctcctccgtcgtcgcggtg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cctctctaggaaccgtttctcaaaggagtgatgtataatttctcctccgtcgtcgcggtg 331

                                                                       
Query: 122 gtgagggggcggattctgaggaggagacactgagggaggaggcagggaaagcaatgccat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgagggggcggattctgaggaggagacactgagggaggaggcagggaaagcaatgccat 271

                                                                       
Query: 182 cctggatccgagctggggagatcaaaggatggggtgagcctcacctctggagatggaggg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cctggatccgagctggggagatcaaaggatggggtgagcctcacctctggagatggaggg 211

                    
Query: 242 gtgggggtg 250
           |||||||||
Sbjct: 210 gtgggggtg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)