BAC Information

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BAC

Clone NameMSMg01-364F10
Chromosome3 (Build37)
Map Location 79,939,913 - 79,940,325
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364F10.T7 (MSMg01no364_f10.b1)MSMg01-364F10.TJ (MSMg01no364_f10.g1)
ACCAG472560AG472561
length790793
length of high quality
(start - end)		485 (49 - 533)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no364_f10.b1 PHD_FILE: MSMg01no364_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:25 2005CHROMAT_FILE: MSMg01no364_f10.g1 PHD_FILE: MSMg01no364_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGAAGCTATTCACCAAAAAATCAAACAACCCAATTAAAAAA
TGGGGTATAGAACTAAACCAAGATTTCATAACCGAGGAATATAAAATGTC
TGAGAATCACCAAAGAAATGTTCAAAGTCCTTAGTGATCATAGAAATGCA
AATCAAAACAACGCTGAGATTCCACCTTACACCAGTCAGAATGGTTAAGA
TCAAAACCTCAGGTGGCATCACATATTGGAGAGGATGTGGAGAAAGAGGA
ACACTCCTCAATTGCTGGTAGGATTGCAAACTGATACAACCACTCTGGAA
ATCAATCTGGAGGTTCCTTAGAAATGTGGAAATAGATCTACCTGAAGACC
AGGTATACCACTCTCTGGAATATATCCAAAAGATGCCCCACCATGCCTCA
GGGGCACATGTTCCACTATATTCATACTGGCCTTATTTGTGATAGACAGA
AGCTGGAAACAACCCAAATGTCCCATGACAGAAGATTAGATACAGAAAAT
GTAGTTCATTTACACCATGGAATACTACTCCACTATTAAGAACGAGGACA
TTCTGACTTTTGTAGGCAAAGGGATAAAACTATAAATATCATCCCCCGCT
GGGATTATTCGCACCCCATAAGGACCTGCGGGGGGCGAATTTCCTCTATC
AATTTCAATTTTACTCCTTTTCATTATTGGCAATAAATCCTCCTATTCTT
TGCCCCATCTAATTCTTAATGGTTCTCTCCATCTTTTATT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGAAAAGTTAATATACCAAT
GAGGTATTGTATTTTCTGTGTAGTTAAAGGGAGATAGAATCCATCTGTAA
ACTCATTATAGCATTTGAGCCTGAGAAGTTTCTCCTTTCTTGGCTTAGCG
GCAGAGAAGTATTCCAGACTTCTACATATTGCCTCAGCATTCTTTTCTGT
TTTCGCAAAGAAATCAAACTACTATTCTGACCCTGTCCACATAATATAGT
AATAGACAACATTAGAGCCAGTGTATGTGGATTGATACAGGTAATCTCAT
GAAAATTATATATAATTCATATGATATATGAATTACTTCATTCCAATTGT
TTCGAGATATAAATATCAAAGTTTCATAATTATATGAATTATATGGAAAC
TTTTAAACATGGAAGACTACTATTTGCGTTCCTTTGAATAGTTCCCTTGC
AGAAGCACACAGGAGAACATTAACAAATATACTTAAATGTTTATGATAAC
GTTGATTGAGGAAGATTGCTCCCGCACTCTTTGCGGTATTTTCTCCCAGG
TGTACTTATATTGCCACAATATGCTCTTTTTTAAATACGTGGGGTTTTCT
TTTAACCTTGGCCCATTAGTATGTGTTTTAATTCTTCCGGGTCCTTTTTT
ATTTTGGCGATTGGCTCCCTCCAGCTTGTCTTTCTTGCTCATTGTGGTGT
TTCTGGCTCCTATTCTCTTGGTAGTCACATTTGCCTCACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_f10.g1 MSMg01no364_f10.g1 CHROMAT_FILE:
MSMg01no364_f10.g1 PHD_FILE: MSMg01no364_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:25 2005
         (415 letters)



>mm_chr3_79939711_79940525
          Length = 815

 Score =  768 bits (397), Expect = 0.0
 Identities = 409/413 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   aggaaaagttaatataccaatgaggtattgtattttctgtgtagttaaagggagatagaa 62
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aggaaaagttaatataccaacgaggtattgtattttctgtgtagttaaagggagatagaa 262

                                                                       
Query: 63  tccatctgtaaactcattatagcatttgagcctgagaagtttctcctttcttggcttagc 122
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 263 tccatctgtaaactcattacagcatttgagcctgagaagtttctcctttcttggcttaga 322

                                                                       
Query: 123 ggcagagaagtattccagacttctacatattgcctcagcattcttttctgttttcgcaaa 182
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggcagagcagtattccagacttctacatattgcctcagcattcttttctgttttcgcaaa 382

                                                                       
Query: 183 gaaatcaaactactattctgaccctgtccacataatatagtaatagacaacattagagcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaatcaaactactattctgaccctgtccacataatatagtaatagacaacattagagcc 442

                                                                       
Query: 243 agtgtatgtggattgatacaggtaatctcatgaaaattatatataattcatatgatatat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtgtatgtggattgatacaggtaatctcatgaaaattatatataattcatatgatatat 502

                                                                       
Query: 303 gaattacttcattccaattgtttcgagatataaatatcaaagtttcataattatatgaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattacttcattccaattgtttcgagatataaatatcaaagtttcataattatatgaat 562

                                                                
Query: 363 tatatggaaacttttaaacatggaagactactatttgcgttcctttgaatagt 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tatatggaaacttttaaacatggaagactactatttgcgttcctttgaatagt 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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