BAC Information

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BAC

Clone NameMSMg01-364F20
Chromosome3 (Build37)
Map Location 13,179,883 - 13,180,217
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364F20.T7 (MSMg01no364_f20.b1)MSMg01-364F20.TJ (MSMg01no364_f20.g1)
ACCAG472580AG472581
length867796
length of high quality
(start - end)
327 (53 - 379)339 (82 - 420)
definitionCHROMAT_FILE: MSMg01no364_f20.b1 PHD_FILE: MSMg01no364_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:27 2005CHROMAT_FILE: MSMg01no364_f20.g1 PHD_FILE: MSMg01no364_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATTCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTATTCTATGTTCCCCATCTTTTAATGGGGTTA
TTTGATTTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATA
TTAGTTCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTT
GGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGTTTTACAGAAGCTTTG
CAATTTTATGAAGTCCCTTTTGTGGATTCTCAATCTTACAGAACAAGCCA
TTACTATTCTGTTCAGGAATTTTTCCCATGTGTTCATATCTTCAGGCTTC
TCCCCATTTTCTCCTCTAAAATTTTTAGTGTCCCTGGTTTTATGTTGATA
TCCTTGATCTACTTTAGTTTCTACCTCCCGCAACTCGATATAATACCGAT
TCTCTTTTGCCATTTTTTTTTATCTGTTTAATTTTCCAGTTTGATCTTTT
TTTCCCCTTTCTTTAAGTCGCTGCTCTTTTTTTTCTTCGATCTGCGCTTA
CCTTTCTCCCCTTCTACTTTTCCTTCTCATCTCTATTTTTCGGTACTTTC
TTTTTCTTTTACTTTTCCCCCTTATTTCATTTCTTCCATTTCTTTATTGA
CTTATTATTTTTTCTCTATTCCCTTCTCCCTTTTTTTTTTTTACCTTCCT
CTCTCTCTCCTATGCTTTTTATCTCTTATTTCTATCTTCTACCTTCCCCC
TCCCCCCTTATACCACCTCATTCTCTTTGCTCTTTCTACTCCTGCTTTTT
GTTTTTTTACCTTTCTTTCTTTCCTTTCTCCCCTTTTCTTTTTCCTCCCT
CTTATCGTTCTTCTTTG
AAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAATTAAGCAAGAATC
AGATTCTCAGAGTCTCAGAAGGTAAAAGAGAACTGACTTATATGCAGAGA
ACAAAAACACACTGAGCTATTAAGAAAATGGAAAATATAAGCTTTCACCC
TTAGAAAACTATCTAAGACAAGACTGTCAACTAGAAAGATATTTGAAAAC
AGAATTGATATCACTTTATGAATTTTGTGGCATGTACAAAAACTCCCCAG
AGTCAATGTAATTATGTGATTTTTGCTTCACCTTCATAAATACGACTCTT
ATACTCAATAAAGATGTTTAAAGCTGTCCAGACAATGAAAGCTGGCTTGT
GATGTTTTANAGAGAAATAAATGTTCTGCCAGGCCTTTTCTGTGAGAAAT
TTGTGATATTTGGTGAGCTGAAGCTCTTTGATCNNATATGATTAACCCCA
TCCCGTCTCCCTAAAGAAAAAACCTTGGCCTTCCTGGGAAAAATGGAACA
ACTAACCGGGGCGTGGAAAATATCCCCCCTTAAAAAAAATTTAGCTGGAT
GGGAAGAAGACCTTTGGCGAGAGTTTCTTTGGAAAAATCTAAATTTGTTT
CTCCCCAACTGGTCAATAATTACTTGGGGTTGATTCCCCCTTTCCCTTTT
ATATTGTCCTTCCTATCCTTGCTCCATGCGCCTTGTTTTTTATTCATTTT
TTTTTATTAATTGTATTCTCTTCATATAACATCTTTACACTACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_f20.g1 MSMg01no364_f20.g1 CHROMAT_FILE:
MSMg01no364_f20.g1 PHD_FILE: MSMg01no364_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:27 2005
         (339 letters)



>mm_chr3_13179683_13180421
          Length = 739

 Score =  627 bits (324), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaattaagcaagaatcagattctcagagtctcagaaggtaaaagagaactgacttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaattaagcaagaatcagattctcagagtctcagaaggtaaaagagaactgacttat 260

                                                                       
Query: 61  atgcagagaacaaaaacacactgagctattaagaaaatggaaaatataagctttcaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcagagaacaaaaacacactgagctattaagaaaatggaaaatataagctttcaccct 320

                                                                       
Query: 121 tagaaaactatctaagacaagactgtcaactagaaagatatttgaaaacagaattgatat 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaaaactatttaagacaagactgtcaactagaaagatatttgaaaacagaattgatat 380

                                                                       
Query: 181 cactttatgaattttgtggcatgtacaaaaactccccagagtcaatgtaattatgtgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactttatgaattttgtggcatgtacaaaaactccccagagtcaatgtaattatgtgatt 440

                                                                       
Query: 241 tttgcttcaccttcataaatacgactcttatactcaataaagatgtttaaagctgtccag 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tttgcttcaccttcataaatacgactctcatactcaataaagatgtttaaagctgtccag 500

                                              
Query: 301 acaatgaaagctggcttgtgatgttttanagagaa 335
           |||||||||||||||||||||||||||| ||||||
Sbjct: 501 acaatgaaagctggcttgtgatgttttagagagaa 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)