Query= MSMg01no364_i09.b1 MSMg01no364_i09.b1 CHROMAT_FILE:
MSMg01no364_i09.b1 PHD_FILE: MSMg01no364_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:40 2005
(469 letters)
>mm_chr3_150399530_150400398
Length = 869
Score = 704 bits (364), Expect = 0.0
Identities = 441/470 (93%), Gaps = 11/470 (2%)
Strand = Plus / Plus
Query: 4 gaattctcagtaagtttac---cccatgtaaactggtttcttgggctgcactgacttaca 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctcagtaagc--acaaacccatgtaaactggtttcttgggctgcactgacttaca 260
Query: 61 agcctatgatctacctgtgataaggaacagctgagtgggtcatttgctgataaacatatt 120
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 261 agcctatgatctacctgtgatgaggaacagctgagtgggtcattggctgataaacatatt 320
Query: 121 tccagggattttccttttcattatctattgaaattctcataacaggttgttcttacaaag 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tccagggattttccttttcattatctactgaaattctcataacaggttgttcttacaaag 380
Query: 181 tcaagtcctgagttggaacattttttcccaaaaaagtatatttctggtgatataacgcat 240
||||||||||||||||| |||||| ||| |||| ||||||||| |||||||||| |||
Sbjct: 381 tcaagtcctgagttggagcattttccccccaaaat-tatatttcttgtgatataactcat 439
Query: 241 cttatgcatcttagctcttgaaagccctgggtca-gccccccccccaacaacaacaacaa 299
|||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 440 cttatgtatcttagctcttgaaagccctgggtcatgccccccccccc-caacaacaacaa 498
Query: 300 caacaaaacccagctaaatattgagataaaaagtaagtgtactcatgctgccaactttat 359
||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 499 caaca---ccctgctaaatattgagataaaaagtaagtgtactcacgccgccaactttat 555
Query: 360 aagaacataggttttcagctctgttaaatgctaagaccatcaagattcttaacaggaata 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gagaacataggttttcagctctgttaaatgctaagaccatcaagattcttaacaggaata 615
Query: 420 ttacctttgctaaaaggtatcttttaaaacatgtgttactatttttggac 469
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttacttttgctaaaaggtatcttttaaaacatgtgttactatttttggac 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no364_i09.g1 MSMg01no364_i09.g1 CHROMAT_FILE:
MSMg01no364_i09.g1 PHD_FILE: MSMg01no364_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:40 2005
(437 letters)
>mm_chr3_150573094_150573928
Length = 835
Score = 766 bits (396), Expect = 0.0
Identities = 427/438 (97%), Gaps = 4/438 (0%)
Strand = Plus / Minus
Query: 1 tact-aaaaaagtttactgtactatttattttttctttctttatgtttgcttttttcttt 59
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 635 tactaaaaaaagtttactgtactatttattttttctttctttttgtttgcttttttcttt 576
Query: 60 gcgactgccatctcttctttgtgtgaacttcatggtcactcccatcaaaggacacattca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gcgactgccatctcttctttgtgtgaacttcatggtcactcccatcaaaggacacattca 516
Query: 120 gtgactgcgttcagaaaaaagctgaattcaaagacacatgcatatggaatgtcttttggg 179
|||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 515 gtgactgcgttcag-aaaaagctgaattcaaaggcacatgcacatggaatgtcttttggg 457
Query: 180 aactttaattgcagaggttgtaaaaatcgaaaaaaaatagcaatattttattcaaataca 239
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 456 aactttaattgcagaggttgtaaaaat--aaaaaaaatagcaatattttattcaaataca 399
Query: 240 gttaatatttgcatttctacatgcctttttatgatctggtataccaacgaacactttgac 299
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 398 gtaaatatttgcatttctacatgcctttttatgatttggtataccaacgaacactttgat 339
Query: 300 cttatttgttcagaggtaagaaacaccaagaaaactgaagacagaggctcacaaaaacac 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cttatttgttcagaggtaaaaaacaccaagaaaactgaagacagaggctcacaaaaacac 279
Query: 360 tcttgactttggagagaccaactcactagtatttctacaatagattttactacactggca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcttgactttggagagaccaactcactagtatttctacaatagattttactacactggca 219
Query: 420 gcattcccactggaagtg 437
||||||||||||||||||
Sbjct: 218 gcattcccactggaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 835
Length adjustment: 9
Effective length of query: 428
Effective length of database: 826
Effective search space: 353528
Effective search space used: 353528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
