BAC Information

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BAC

Clone NameMSMg01-364I22
Chromosome3 (Build37)
Map Location 43,081,916 - 43,082,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364I22.T7 (MSMg01no364_i22.b1)MSMg01-364I22.TJ (MSMg01no364_i22.g1)
ACCAG472727AG472728
length814793
length of high quality
(start - end)
276 (53 - 328)374 (81 - 454)
definitionCHROMAT_FILE: MSMg01no364_i22.b1 PHD_FILE: MSMg01no364_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:42 2005CHROMAT_FILE: MSMg01no364_i22.g1 PHD_FILE: MSMg01no364_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTACTATTTTCGATATTAACCCTCTGTTGGATGTAAG
GTTGTTGAAGTTCTTTTCCCAATCTGTAGGCTGCCATTTTGTCCTATAGA
TATGTTTCCTTTGCCTTACATAATCTTTTAATTTTCAGGAGGTACCATTT
AATGTTAATCTTAGTTTGTGAGATATTGGTTATCTATTCTGGAAGTTGTC
TCTCATACCAATGCCTTCGATAATATGCCTTGCTTTCTCTTCTGTTAGGT
TTAGTGTTTCTAGTTGTACAGATTTGGTGTATCTGGTTAAGGCCTTTGAT
CCACTTGGACCTGAGTTTTGTGTATAGTGATCAATATGGATTGATTTGCA
TTATTCTTTGTGTATATACTCTGTTCACCCACCTATTATTTTTTAAATAA
CGAACCCTTATTTTCTTTTTTCCTGCTTTGTATTCTTTATCTTTTCCTTT
GTCTTTTTATCTATTGTACGTTTTTTTTCTCTGCCTCTTTTTCTTGACTC
TCTCTTATCTCTGTCTTCCCTTTCTTTTGCTTCCTATTCCGTTTAACCAC
CCTCTCTTACTCTATCCTATATTCTTTATGCTTTGCTTCTTTTTCATGCC
TGCCCCTATTTTCCTAGCTTTTTTCTTTCCTACACTTATACATTTCTTTA
TCCACGCTTTCCTTTCCCCTCTTCTTATAAACCTTCTTCTACTTACCTCT
TCTATTTCCATCTTCTTTCTCTCTTTCTTTTCTATCTACTTATCTCCTTT
CTCCTCCACCATCT
ATTTTTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGACTTTCTTTCATTGCT
ATGGAATACAAACTGTAGGTTTTGTTTAAGCACAAAACCCGTGTTTCTTT
TCATTTTATGTGTATGTATAAGACCCCGAATATGTACATGGAATCCATAT
GCTTCCTGCTCTGGGAAGTCATAAATGGTCCATGGATTTTTAAAAGTAGT
GTTAGAGGTAGTTAAGAATTTGCTTCTTAGAAAATGAACCTAACTCCTTT
GTAAGATCTTAATCACTAGACTCTAATATCTAATTTTCAAAGCCAAAAAT
ATTTCTATTTTCTGTGATGGTCTCCTATTGTTTCAAATAGAAGATTCCTT
GATCAGGGATGACATCTGTACTTATCTATGAATATAGGAATAAATATTTA
GAATGTAATTATAAATTATGCTATTATAGTAAACTGGCAGGTTAAAGGTC
TCCTTCCAAATCTAATAAGTGGCCTACCTCCCCCCTGCTTTGCGTAGCTT
TGCAATAACAACCTCAATTTTCTTCTTTTCTGAAGTAACAATAACCATAA
AGTCCTTTGGTGACCAACACGAATTGTGTGCCTCTTTATACCCTATATAA
CAATAGGCCCTGGGTTGTGGTTTTTTTCTCTCCTTATGTCTAAACATTGT
ATGGCCACCGTTCTTTTTATATTTCACTCTCGTAAGAATATTCATATTTT
TATCTGCGGTCCGCAATCTGAATTATTCTTCTATTCGTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_i22.g1 MSMg01no364_i22.g1 CHROMAT_FILE:
MSMg01no364_i22.g1 PHD_FILE: MSMg01no364_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:42 2005
         (374 letters)



>mm_chr3_43081716_43082489
          Length = 774

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagactttctttcattgctatggaatacaaactgtaggttttgtttaagcacaaaaccc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 acagactttctttcattgctatggaataaaaactgtaggttttgtttaagcacaaaaccc 260

                                                                       
Query: 61  gtgtttcttttcattttatgtgtatgtataagaccccgaatatgtacatggaatccatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gtgtttcttttcattttatgtgtatgtataagaccccgaatatgtacatgggatccatat 320

                                                                       
Query: 121 gcttcctgctctgggaagtcataaatggtccatggatttttaaaagtagtgttagaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcctgctctgggaagtcataaatggtccatggatttttaaaagtagtgttagaggta 380

                                                                       
Query: 181 gttaagaatttgcttcttagaaaatgaacctaactcctttgtaagatcttaatcactaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaagaatttgcttcttagaaaatgaacctaactcctttgtaagatcttaatcactaga 440

                                                                       
Query: 241 ctctaatatctaattttcaaagccaaaaatatttctattttctgtgatggtctcctattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctaatatctaattttcaaagccaaaaatatttctattttctgtgatggtctcctattg 500

                                                                       
Query: 301 tttcaaatagaagattccttgatcagggatgacatctgtacttatctatgaatataggaa 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaaatagaagcttccttgatcagggatgacatctgtacttatctatgaatataggaa 560

                         
Query: 361 taaatatttagaat 374
           ||||||||||||||
Sbjct: 561 taaatatttagaat 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)