Query= MSMg01no364_n01.b1 MSMg01no364_n01.b1 CHROMAT_FILE:
MSMg01no364_n01.b1 PHD_FILE: MSMg01no364_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:04 2005
(494 letters)
>mm_chr3_88112728_88113621
Length = 894
Score = 940 bits (486), Expect = 0.0
Identities = 489/490 (99%)
Strand = Plus / Minus
Query: 5 ggaattctccttgatactcttaggtttttgtttccaggctctaaggtagtccagttcttc 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 694 ggaattctccttgatactcttaggttattgtttccaggctctaaggtagtccagttcttc 635
Query: 65 tgtctagttctaagtaaataaggacaccctactctgaataggaatgaccatgccagacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtctagttctaagtaaataaggacaccctactctgaataggaatgaccatgccagacac 575
Query: 125 ctaactctcaagcacatactggacaagcttaccttttctacccttgcatattttttgatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctaactctcaagcacatactggacaagcttaccttttctacccttgcatattttttgatg 515
Query: 185 tcaatttcctttctgccattctcttcaaactgcacagtcttaacagcatccagtgcaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcaatttcctttctgccattctcttcaaactgcacagtcttaacagcatccagtgcaatg 455
Query: 245 ttgcatgccaaggaggaccaccgactgatgacttttgtagtaatagagctattgatgatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttgcatgccaaggaggaccaccgactgatgacttttgtagtaatagagctattgatgatg 395
Query: 305 ctcaacatcatctcacggttattgacatcaacaggagtactggaaaaagaaagccagaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctcaacatcatctcacggttattgacatcaacaggagtactggaaaaagaaagccagaaa 335
Query: 365 acagtgaacataaaacatttaacacagtcactcatgtaagcctcaaagagcataagagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acagtgaacataaaacatttaacacagtcactcatgtaagcctcaaagagcataagagca 275
Query: 425 tgccaagaacacgccaagaggcagaatgaggtggttaaagtgacaagacatcttgctaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgccaagaacacgccaagaggcagaatgaggtggttaaagtgacaagacatcttgctaaa 215
Query: 485 ctttcaaata 494
||||||||||
Sbjct: 214 ctttcaaata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no364_n01.g1 MSMg01no364_n01.g1 CHROMAT_FILE:
MSMg01no364_n01.g1 PHD_FILE: MSMg01no364_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:04 2005
(305 letters)
>mm_chr3_87975506_87976213
Length = 708
Score = 569 bits (294), Expect = e-166
Identities = 304/308 (98%), Gaps = 3/308 (0%)
Strand = Plus / Plus
Query: 1 tctacccc-attcaagtcccagaaagagggaagaagggagggatgggccagccaagagct 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacccccattcaagtcccagaaagagggaagaagggagggatgggccagccaagagct 260
Query: 60 gacccgtccccaaacttgacaatcacccacactcctggctcctgggtctgggtgagtcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccgtccccaaacttgacaatcacccacactcctggctcctgggtctgggtgagtcca 320
Query: 120 agtgtgtggctgttggtttgttttcattatttctttccgtgctgtacggtgatgctttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtgtggctgttggtttgttttcattatttctttccgtgctgtacggtgatgctttct 380
Query: 180 agtattctgcacattaagaaaagtcctcgagattcttacgagtttggtttgaaaactctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtattctgcacattaagaaaagtcctcgagattcttacgagtttggtttgaaaactctt 440
Query: 240 tcactatatttgttgtaaagaggtttactattaaaagaaataaaaaaa--catgtttctg 297
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 441 tcactatatttgttgtaaagaggtttactattaaaagaaaaaaaaaaaaacatgtttctg 500
Query: 298 atacctca 305
||||||||
Sbjct: 501 atacctca 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 708
Length adjustment: 9
Effective length of query: 296
Effective length of database: 699
Effective search space: 206904
Effective search space used: 206904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
