BAC Information

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BAC

Clone NameMSMg01-364P23
Chromosome3 (Build37)
Map Location 3,554,498 - 3,554,899
singlet/doubletsinglet
Overlap geneHnf4g
Upstream geneLOC667655, LOC100039140
Downstream geneEG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364P23.T7 (MSMg01no364_p23.b1)MSMg01-364P23.TJ (MSMg01no364_p23.g1)
ACCAG473060AG473061
length1,716788
length of high quality
(start - end)
---403 (81 - 483)
definitionCHROMAT_FILE: MSMg01no364_p23.b1 PHD_FILE: MSMg01no364_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:22 2005CHROMAT_FILE: MSMg01no364_p23.g1 PHD_FILE: MSMg01no364_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGAGAGCTTTATGCGCGCTTTCACCTCTTGNTGACCTGCGCTTGTATGA
ACTGATGCTGTGGAGTTATATCTGCTAGAACTTATAGAGCAGGCTGCTGC
ACTAGGCCACGCGGCGGCTGACAGTCAGCAACTCTCATAATATCTGTGTG
CTCATTGTCGAGACACGAGCACCTGAACTTATGGTATCTTATAGAGAGAG
TCTACATCTGACACTCGACCGCACCGCCGTGCGTTGCGCGTGAAGCGAGG
ATGTTGCGAGTGTCGATGAGGTTCTGATGGTGTATTCGCATACTATTGTG
ATGTCGGTTTCTGCACTTCTCCGTATAGTGTCCGCATCGATTGTTTGTCA
CTACGCGCCGTACTACGATGATAATGAGGCTTGCAGGCAGGACGCGAGAG
CGCGTGTAGCAGACAATACCATACAGTAACTAGCCTCAGCTGAGCGATGA
GTATATAGTCCACACGATGCTAATCGAATATGAACATCTACTGCTCGCNA
CTTTTTTGTGTCATCCCTACTCAGTGTGCGGCGTGTGTCGCGGTGGAGCT
CTGTGTAGCGCCCGCGCGTCGTCCNCTATGTACGCGCCTTGCTCTCGTGT
TACCGTCTCTCTGTATATCCACATGCGTCGACGAACAGTATTATATATGT
CGCGCGTTCCTATCTGATCGCTCGTCGTCAGCGGCGTTGCGCGTGCGTCG
CTTGTGTAGCGTGATGTATGCAGTAGCGTATACGTATGACGCGTGTAAGC
ATGTATGTACGTGTGTACGTAGTTCGCGTGCGTGACTCATTCGGATGTAC
CTGGCGTCATCTAGTTGTCTACGTCGTCGCGCCAGAGCTGATTATAGCGT
CGCTCTANTCTGACGCCCTGATTACCGAGAGATATGCGCGATATCGTTTC
TACGAGACACTCGTATCTCTCTCGCATACGTGCTTGACATATACAGCGCG
TATCTCTGTATGCGACGCGCATATTGTTAACGTGCTCGCTCTATTGCGCA
TGCGTCATGATGCGTGNCGCGATACTTCGATCATAGCGCGTACGTATCGT
GTCTCGTCGCGCNCGCGTATAGTCGTCACGGCGATAATATGATCGAGTCG
GCCATGTGCGATCGTCTCGATCGTCNGCTGTTGTNCGCTCGCGCACCCAG
TCGGCGCGCGTCTGTATGTCANCTCNCGCTGTCTCTCGCCCTTNTATGTC
GGTCGTCGCCGCGTATATCGCTACTGACTGATCAGCACCGATGTGTATCT
CTTACTCATGACGCGTTACCACTANCGCGTTATGACTCGCTCTGGGACAG
TGTGACCGAGCTTATCGACAGTATGTTNCGCGTCGATATACATAGCCGCA
CACGTCGGCGTCGACGCTNGCTACGTGAGTGTTCGACGCAGCATACTCAG
TGATCGTCTAGTCGCTGTGCTGGTGATATCGCGATGATCTGCGCGCTTCG
ACTCTAACGCTGATAGNTGCTNCGATTCTGTACGGNTATATCTCANCGCG
TTATCTAGTCTCGCGCGCGCGCGCGCGTTCGCANCGGCACTGTTATCTGA
CGCGCGAGTGCACGGCTAGTCGCTCTAGTATGTCTCTNACGCCGCTCTGT
CGCAGACATTGTCGTCGTATGCGCACATCGTANATANTATCTCGATATTC
GTGCGCCGCNCACTCTATGTACCTACTACGCTTCTCGTATAGTCGCGGAC
AGAGATGAGATGCGCG
NTTTCTTCGATGCTATGNATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACACTGTGAATACTTGG
CTGCTTAGAGACACAGTCATTCACTGCTTCAGGCATGTTTACTGTTATTC
ATGCACATAAATGCAACAATCCTATCCAAATGCACATGTGTAAGTTCCCC
AGAAGCAGGAAGCTCTTCACTGGAGTTCTATCTTTTATACGACTCTTCAC
TGTTTTGGATGGTGAGACAGAGATAGACAGGAGAGAGAGGAGGGCAGGGG
AGAATTTGTTCAGTGGATACACAGTGAATGCATATGTGAAGAATAGTTAA
AATAAATTGATGAGAATTTTACAACGTATTTTAAATACATTTATAAAAGT
TTGTTTTAGGACCCTTAGCATTTGAAATAAAAGTCACTGCTTCCCTTATT
CTACCTCCCAAATCATAGTTACAATCTCAAAAATGTCAGTAGGAAAACAT
ACATGAAAGGGGGGGGACTATTAACTGTCTTTAAATTTTTGCCCTTTATT
TAAAAAGCCCGCCACAAATGAAAACTGTGTTCCTTATATTTTAACCATTT
CCAGCGGGGGAGAAAAATGTAATTTGTCCCCTTATGGCAGCCCCAACCAA
AAATATGGTTTGTTTCCCCCAAGGGTCGGTTCTTTTCCAAAAAAAAAAAA
GTGTTTTTATGCTTTAGGAAACAAAAACAATAAAAGCTTTCATATCCATT
TCCCCAAAATTTTTGAATTTTTATATTTCTCTTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_p23.g1 MSMg01no364_p23.g1 CHROMAT_FILE:
MSMg01no364_p23.g1 PHD_FILE: MSMg01no364_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:22 2005
         (403 letters)



>mm_chr3_3554298_3555100
          Length = 803

 Score =  731 bits (378), Expect = 0.0
 Identities = 396/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacactgtgaatacttggctgcttagagacacagtcattcactgcttcaggcatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atgacactgtgaatacttggctgcttagagacacagtcattcactgcttcaggcatgttt 543

                                                                       
Query: 61  actgttattcatgcacataaatgcaacaatcctatccaaatgcacatgtgtaagttcccc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 542 actgttattcatgcacataaatgcatcaatcctatccaaatgcacatgtgtaagttcccc 483

                                                                       
Query: 121 agaagcaggaagctcttcactggagttctatcttttatacgactcttcactgttttggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agaagcaggaagctcttcactggagttctatcttttatacgactcttcactgttttggat 423

                                                                       
Query: 181 ggtgagacagagatagacaggagagagaggagggcaggggagaatttgttcagtggatac 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 422 ggtgagacagagatagacaggagagagaggagggcaggggagattttgttcagtggatac 363

                                                                       
Query: 241 acagtgaatgcatatgtgaagaatagttaaaataaattgatgagaattttacaacgtatt 300
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 362 acagtgaatgcatatttgaagaatagttaaaataaattgatgagaattttacaatgtatt 303

                                                                       
Query: 301 ttaaatacatttataaaagtttgttttaggacccttagcatttgaaataaaagtcactgc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttgaatacatttataaaagtttgttttaggacccttagcatttgaaataaaagtcactgc 243

                                                     
Query: 361 ttcccttattctacctcccaaatcatagttacaatctcaaaa 402
           |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 242 ttcccttattctacctccaaaatcatagttacaatctcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)