BAC Information

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BAC

Clone NameMSMg01-365P18
Chromosome3 (Build37)
Map Location 71,143,110 - 71,143,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041384, LOC625868, LOC670542, EG625901
Downstream geneEG667377, LOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365P18.T7 (MSMg01no365_p18.b1)MSMg01-365P18.TJ (MSMg01no365_p18.g1)
ACCAG473809AG473810
length7601,176
length of high quality
(start - end)
366 (36 - 401)---
definitionCHROMAT_FILE: MSMg01no365_p18.b1 PHD_FILE: MSMg01no365_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:40 2005CHROMAT_FILE: MSMg01no365_p18.g1 PHD_FILE: MSMg01no365_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAC
TATCGCTACATCTCCTATAAAATTAGGGAAGCCAAAAGAATTACATGAGA
AATGTGGGACAACTGAGACCATGTTCTAAGTTTTCACTTTGGTATATACC
GAGCACAAATGCTTCAGGTGAATGTGGGGATCAACCTAGTGCATGGAATA
ATAATATAAACTAGAACACTGAGATAATGTTACTGATTTTTTCCTTTCTA
TTAAAACTCTTGATAGTGTAAATTTAAATGAATTATTAAAGAATGCTATA
TTGTTATCTAAATTGTTTTGTAATAATCTTTTCAAAGTAAATCTGATATA
ATACCAATATAAATAATATAGTCCATGGAGCACAAAGTCTAAATTTGAGG
AAAATCAGTGAATCTTGATGTAAAAAATTGTAAATCTTGGTTGCTTAAAA
TACATGTTCCTTATACTACATCCATTCCTGTAGGCTAACAAAAGTGTTAG
TAACTGCTTTACTTCTAAGTATAATTGTATAATACCTCTATTATATGCCT
CATATGACTGTTATTTTATATACCGACAGTAAAATTCTAACATACTTAAT
CCCAGTTTATACAAGTTACATGCTTTATACTACTTACGCATTTCTTTCCC
TTACCGTTCTTATTAACTATTTCTTTCTCTGCTACTGCTGTTCATACCAC
TACTTTACTTTTGCCCTTTTCCCAATTTACTCAATACTTATAATTTTTTG
CATTTTTTCN
CTTTTTCTTCTCCCNCNCCCTTTTTTCTCCCCTGCCCTGCTCNTTTCTCC
CCTTAACATTTACTTTCCTTTACCGGCCGCCCCGCGTTCCTCCCGGCTCC
TCCCCTACTGTCTGGCCGTCCTTCCCCCGTCGGTTTGCGTCGGGTTCCCG
TGTTTGCCCGCGCAGAGCCACGCGGTGCGCTGGGGGGGGCGGCGGGGTCG
TGGAAGCATTGATAGTGGTTGCGGCCGCCCTATCGGGTGTAGCTTGGTTT
ACGGCCCCCGTGGCAGAGTGGTGAGAAGGAGGCGCTCCGTGTCCGGCGTT
CCTTCCGCCCGCTAGGCTATGCCGCCCCGTTCCTCCTCTTCGTGTTTTGC
CCCTGTTTTTGTGGAGCGTTTATATAGAATGCGCCTTTGCGCCCTATTCC
CACATTTTACCCCCCCACACACTTCATTCTCATCCTCGCGCGGGCGTGTA
TGTGTGCGTTTGTGCTCTCGTTCCCCACTTTCTATCGTGTTTTGCCGTCT
GCGCTGTCCTGCGCCCCCGTATAGATTCTCGTCCTGTTATCGCCTCGCCT
ATTATGCCACCCTAGGCTCGCGCCCCTCCCCCTCTGGTAATCCGCGTCTG
TATATGGATGCCCCTCCCTTATCCCTAGGCTAGTTACCGCAGGCTGAATC
GAGTAGCGTAGGCGTGCCGCGCGCGTGTGTCCGTCTCGCGCCGTCTGTTT
CTTGGTTCTCCCGAGAGCGCTGGACCTTTCTTCGGAGCCCCCCTGCTGCC
CACTCCGCGATAACCCGTCTGACTCCGAGTTCCGCCTAGTCGTTCACCCC
TCCGGTCTGTTGACCCCCGCGTGTTTTTCGTACGCAGCCCTCCGTGTGTT
GCCCGAAGAGACACACTTTGGTCGCTTTCTTGACCGCCAGCTCACTAGTG
TGCCCCCCTGCGTTGACCACCGTGTTTGCCGCCCGGCCACCGAGGCGCGG
GTAGACGCGTTGGTGCCTCGACGCGCGCTTGTGTCCGGGTGCTATCGCTC
TCGTCGCCTATTCCTCTCTCTCTCTCTTCGCCCCGANGATGCTTTATTTA
TTTGAGGCGTGCGGTGTTGGCGCGCGTCTTATATTCCGCTTGCCACCGCC
GTGGTCGGAGTTAATATATCGAAGCTCGATATCTTCCTATCCGCGCTTCA
CTCGCCCGGCCTCACCACTCTGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_p18.b1 MSMg01no365_p18.b1 CHROMAT_FILE:
MSMg01no365_p18.b1 PHD_FILE: MSMg01no365_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:40 2005
         (366 letters)



>mm_chr3_71142906_71143671
          Length = 766

 Score =  648 bits (335), Expect = 0.0
 Identities = 356/363 (98%), Gaps = 2/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtactatc-gctacatctcctataaaattagggaagccaaaagaattacatga 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaattcagtacta-cagctacatctcctataaaattagggaagccaaaagaattacatga 508

                                                                       
Query: 64  gaaatgtgggacaactgagaccatgttctaagttttcactttggtatataccgagcacaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 507 gaaatgtgggacaactgagaccatgttctaagttttcactttggtatataccaagcacaa 448

                                                                       
Query: 124 atgcttcaggtgaatgtggggatcaacctagtgcatggaataataatataaactagaaca 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgcttcaggtgaacgtggggatcaacctagtgcatggaataataatataaactagaaca 388

                                                                       
Query: 184 ctgagataatgttactgattttttcctttctattaaaactcttgatagtgtaaatttaaa 243
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgagataatgttactgatatttccctttctattaaaactcttgatagtgtaaatttaaa 328

                                                                       
Query: 244 tgaattattaaagaatgctatattgttatctaaattgttttgtaataatcttttcaaagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgaattattaaagaatgctatattgttatctaaattgttttgtaataatcttttcaaagt 268

                                                                       
Query: 304 aaatctgatataataccaatataaataatatagtccatggagcacaaagtctaaatttga 363
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaatctggtataataccaatataaataatatagtccatggagcacaaagtctaaatttga 208

              
Query: 364 gga 366
           |||
Sbjct: 207 gga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)