AGGGATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACAGAAATGGCTAGAAGTGTCTGAATTCTCAGGTAACAGT
CCCACATGACCTTTCTCTTCCTGACTTTTCATGAGGGGAAGTCATCAGTC
CACAAGAACAATCATGAGGGAATATCTCACAAGCAGTCAGAGCTGATCTC
ATGGAAATGTCAGCTATTTGGCTGTGAGGGTCCTGCTTTCTGATATCCCA
TCAGAATGGACTTTTACCTAAAAAAACAAAATAATAGCAATCACTGGTGA
ATTCAAGAATATGAAACCTTTGTTGATGCTGAGGGAGTGAAAATTACTGC
TTTCACTATGGAAAACAGCATGGAAATTGAAATGCAAAGGTAAACCTAAC
ATATGATTCAATAATTACACTGCTTTGTACACATCTAAAGCAAAGGTAAT
CAACGCCTCAAGGAAATGTCTGAATTTCCACTTTCATTGCCAAGGCAAGA
AAGCAACGAGTGTCCATCAGAGGATGAATAGAAAAAGAAAGTGTGATACA
CATGCAGAAAATATCAGTCAGTCTTAATAAGGAAGGAAATCCCACAATAA
TGAAAACACAGATGAACCTATGGACACTGTGCTAAAGGAAATAAGCCACA
CCCAAGAGGGCAAACACAACAAGATCTTATTTATTTGTGCACTCAATAAA
AGTCAAACCACAGAAACAGATTCAAAGATCATTTCCCGAAATTGGAAAGT
G

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAACTCTGTACCCCATTT
TTCTATAGGGTTATTTGATTCTCTGGAATCTAACTTCTTGAGTTCTTTGT
AAATATTGGATATTGGTCCTCTATCGGATGTAAGATTGGCAAAGATCTTT
TCCCAATGTGTTGGTTGCTTTTTGCTGGAAAAAAAAAAAAGCCTGATATG
GCTGTCTCCTGAGTGGCCCTGCTAGAGCCTTTTAAATACAGAGGATGATG
TTAGCAGCCAACCATTGGAATGAGCGTGGAGTCCCTAATAGAGGAGTTAG
ATAAGGGACTGACAGAGTAGAAGGGTTTTGCAACCTCATGGGAAGAACAA
CAATATCAACCAACCAGACACCCCCTCCCCTCCAACCCAGAACTCCCAGG
GACTAATCAACAAAGGAGTACACATGGCTCTAGCTGCATATTTCGAAGAG
AATGACCTTTTCATGCATCAATGGTAGGAGAGGTCCTTGGTTCTATGAAA
GCTCGATAGATGCCCCAGTGTAGTGGAACTGAAAGTGGGGAGGTGGGTGG
NTNNNNNNNNTNTTNNNNNNNNNNNNNNGNNTNNGNNNNNTGTNNNTTNN
TTTTNNNTTTTTTNTTTTTTNNGTTTTNTTTTTTTTNNTTNNTTTTTTTT
TTTNNNNNNTNTTTTTTTTTTNNNNTTTTTTTTTTTTTTTGGG

Query= MSMg01no366_a04.b1 MSMg01no366_a04.b1 CHROMAT_FILE:
MSMg01no366_a04.b1 PHD_FILE: MSMg01no366_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:42 2005
         (614 letters)



>mm_chr3_140999518_141000531
          Length = 1014

 Score = 1098 bits (568), Expect = 0.0
 Identities = 601/612 (98%), Gaps = 1/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaacagaaatggctagaagtgtctgaattctcaggtaacagtcccacatgacct 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattgaacagaaatggctagaagtgtctgaattctcaggtaacagtcccacatgacct 263

                                                                       
Query: 64  ttctcttcctgacttttcatgaggggaagtcatcagtccacaagaacaatcatgagggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctcttcctgacttttcatgaggggaagtcatcagtccacaagaacaatcatgagggaa 323

                                                                       
Query: 124 tatctcacaagcagtcagagctgatctcatggaaatgtcagctatttggctgtgagggtc 183
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctcacaagtagtcagagctgatctcatggaaatgtcagctatttggctgtgagggtc 383

                                                                       
Query: 184 ctgctttctgatatcccatcagaatggacttttacctaaaaaaa-caaaataatagcaat 242
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 ctgctttctgatatcccatcagaatggacttttacctaaaaaaaacaaaataatagcaat 443

                                                                       
Query: 243 cactggtgaattcaagaatatgaaacctttgttgatgctgagggagtgaaaattactgct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 444 cactggtgaattcaagaatatgaaacctttgttgatgctgagggagtgaaaattattgcc 503

                                                                       
Query: 303 ttcactatggaaaacagcatggaaattgaaatgcaaaggtaaacctaacatatgattcaa 362
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 ttcactatggaaaacagcatggaaattgaaatgcaaaggtaaacctaaaatatgattcaa 563

                                                                       
Query: 363 taattacactgctttgtacacatctaaagcaaaggtaatcaacgcctcaaggaaatgtct 422
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 taattacactgctttgtacacatctaaagcaaaggtaatcaatgcctcaaggaaatgtct 623

                                                                       
Query: 423 gaatttccactttcattgccaaggcaagaaagcaacgagtgtccatcagaggatgaatag 482
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaatttccactttcattgccaagacaagaaagcaacgagtgtccatcagaggatgaatag 683

                                                                       
Query: 483 aaaaagaaagtgtgatacacatgcagaaaatatcagtcagtcttaataaggaaggaaatc 542
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 aaaaagaaagtgtgatacacatgcagaaaatatcagtcagtcttagtaaggaaggaaatc 743

                                                                       
Query: 543 ccacaataatgaaaacacagatgaacctatggacactgtgctaaaggaaataagccacac 602
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccacaatgatgaaaacacagatgaacctatggacactgtgctaaaggaaataagccacac 803

                       
Query: 603 ccaagagggcaa 614
           ||||||||||||
Sbjct: 804 ccaagagggcaa 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)