BAC Information

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BAC

Clone NameMSMg01-366A12
Chromosome3 (Build37)
Map Location 95,626,580 - 95,627,006
singlet/doubletsinglet
Overlap genenone
Upstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327
Downstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A12.T7 (MSMg01no366_a12.b1)MSMg01-366A12.TJ (MSMg01no366_a12.g1)
ACCAG473845AG473846
length824781
length of high quality
(start - end)		199 (80 - 278)427 (80 - 506)
definitionCHROMAT_FILE: MSMg01no366_a12.b1 PHD_FILE: MSMg01no366_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:44 2005CHROMAT_FILE: MSMg01no366_a12.g1 PHD_FILE: MSMg01no366_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAT
CCGCGGAATTCACTTTGTTTTACAGGCTGGCCTCGAACTCAGAAATCTAC
CTGCCTCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGC
AGGCTCCTGTTTTAACTTCAGGAGTTCAAGGTCATAGTTAGCTACTTAGA
GAATGTAGGCCAGTGTAGTTATATGAGAACCTATCTCAAAACCCAAAAGC
CACCAAAAATATAAAACAATCATTTGAGACAACAAAATTGCATGTCAGTA
TTCATACTGACACCTATAATTATAATTTTTTTTTTAGCCACACACAACAC
TTTAACTGTCCCCGTCGCTTTTTCCCCCCCATTTATTCACTGCATTCGCA
TATATTCCCTTCTTTCTCTCCCCCCCCCCCCCACCTCATTTTTTACCCTC
TATACCCTCCTTCTTATTCCCATTCTATTCTAATAATCTTTTAACCCCAC
CATCTTTTTTTTTATTCCTATATTCACTGTTACTACGTCATTTTTCTATT
ATTTTTTACCAATCATTCTATTCTTACCCTTCCCCTCCTCAGTTTTTTTT
ATTCCATTTTTTTACCTAAACTCTTTCTCCCCTTTTTTAATTCTTTCCCT
TCCTTCCTTATCCACACCTCATTTTTTCTCCCCATTATCCCCTAACATTT
TTTATTACACTACATTTCCCCCCTGTTCCCCTTATTTCCTTTTTTTACCT
TTCCCTTTTTCTTTCTTTTCACCCCTATTTCTTTTCTCTTCATTCCCTTC
TTCTCCTCCTTCTTTCCTTTTTTG

NNNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACTAGGTTGGCC
TCGACCTCTCAAAGATCTGTCTACCTCTGCCTTCTGAGTACTGAGATTAA
AGGCATATACCACCATGCCTGGCCAAGCAGTCTGACATTTAGATATCTTG
TGTGGAAGTCTGTGTGAGAAAGCTGTGAATATACTGTGAACCATGGATGG
CAGAGTGCAGAATGTTCTTCCCACGAGGTGGCCTTCTAGAAAGAATTGCA
TAAGCTGTGATAAGTGAATGCACTTGAAAGTCAGTACATGAAGGGGATGC
CTGGCATGTCCACAATCTCTGCACAGGAAAGGCAAATCCTGGGAGGAATA
GTCTTAACTCTTCACAGGACCAAAGATAAGACATAACATCAGGTGTATTC
CCTTGCTGTCCTGTATTCATGTAGGCTAATGGTAAACATCACCTCACTTT
AAAAAAAAATGGGACGTGCTTTGTTTACACTACTCTTGAGCTCTACAGTC
TTGCTCTGAAACCCTTTACCCACCCAAAAAAATGGATTGCTTAACACCAC
CAATTGGGAGTGGCAAAAGAATTCATAAAATCCCTCCTTTCCTGAAATGT
GATGGGGGGGTTTCTCCTTTAAAGCCGCCTGGGTTACAACCTTTTCCATC
TCAGGAAAAAAAACCAGGGGAAAATACCTTTTTTTTGTTGGCGGTTGGTT
GCGTTTTGCCACCTTATCTTCTCCACCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a12.g1 MSMg01no366_a12.g1 CHROMAT_FILE:
MSMg01no366_a12.g1 PHD_FILE: MSMg01no366_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:44 2005
         (427 letters)



>mm_chr3_95626286_95627112
          Length = 827

 Score =  787 bits (407), Expect = 0.0
 Identities = 422/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtagactaggttggcctcgacctctcaaagatctgtctacctctgccttctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 actatgtagactaggttggcctcgacctctcaaagatctgtctacctctgccttctgagt 662

                                                                       
Query: 61  actgagattaaaggcatataccaccatgcctggccaagcagtctgacatttagatatctt 120
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 661 actgagattaaaggcatataccaccatgcctgggcaagcagtctgatatttagatatctt 602

                                                                       
Query: 121 gtgtggaagtctgtgtgagaaagctgtgaatatactgtgaaccatggatggcagagtgca 180
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 601 gtgtgggagtctgtgtgagaaagctgtgaatatactgtgaaccgtggatggcagagtgca 542

                                                                       
Query: 181 gaatgttcttcccacgaggtggccttctagaaagaattgcataagctgtgataagtgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatgttcttcccacgaggtggccttctagaaagaattgcataagctgtgataagtgaat 482

                                                                       
Query: 241 gcacttgaaagtcagtacatgaaggggatgcctggcatgtccacaatctctgcacaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcacttgaaagtcagtacatgaaggggatgcctggcatgtccacaatctctgcacaggaa 422

                                                                       
Query: 301 aggcaaatcctgggaggaatagtcttaactcttcacaggaccaaagataagacataacat 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 aggcaaatcctgggaggaatagtcttgactcttcacaggaccaaagataagacataacat 362

                                                                       
Query: 361 caggtgtattcccttgctgtcctgtattcatgtaggctaatggtaaacatcacctcactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caggtgtattcccttgctgtcctgtattcatgtaggctaatggtaaacatcacctcactt 302

                  
Query: 421 taaaaaa 427
           |||||||
Sbjct: 301 taaaaaa 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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