BAC Information

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BAC

Clone NameMSMg01-366H09
Chromosome3 (Build37)
Map Location 108,252,765 - 108,252,938
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars
Downstream gene5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366H09.T7 (MSMg01no366_h09.b1)MSMg01-366H09.TJ (MSMg01no366_h09.g1)
ACCAG474168AG474169
length786813
length of high quality
(start - end)
466 (76 - 541)164 (75 - 238)
definitionCHROMAT_FILE: MSMg01no366_h09.b1 PHD_FILE: MSMg01no366_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:19 2005CHROMAT_FILE: MSMg01no366_h09.g1 PHD_FILE: MSMg01no366_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGNG
NNGGAATCTGCCTTTCTCTGCCACTCAAATGCTGAGATTAAAGGCATATA
CTACAATGTCTGGAAAAATTTTGCTATTTAAAAAAAATATACACAAAAGG
GGCTGGAGAGATGGTTCAGTGGCTAAAAGCACTGGCTGCTCTCCCAGAGG
ACCTGGATTCAACCCCTAGCACCCACGTGACCGCTCACAATCATCTCTAA
CTCTAGTTCCAGGGCATCTGGGACCCCCTTCTGGCTTCCACAGGTACCAG
GCATATACAAAACACACACACACTTTCTACACATATATATATAATTAAAA
CAAAAAATTTAAAAATGCAACATATATAAATGTAAGAATCACAATTGTTT
CTATGTAGTGGTGAATTTTCTTTACTTTTAATAATTAATATATTTTATAA
TAAATGCTTTATTTTATGGAATTCATTTCTATACACTCCTTGTGCATATT
TTAGAAATGTTTGATCTTCCCAGTGCCTTGGATTTCTTGTGTACTTGTTA
AATTGATACCATACTTAAGGCTGTAACTCTGAAGACTACACATGTTACTA
CTAAAGACATTCTGTACATATATTACTGTGCATTATAAATATTCCCTTTT
TGAAAAAAATTTAATTAAACCTATAAGAATTTCTGGAGATATTTTGCTTA
ATTACCCACTCCTCTTCTAAAAAAAATTTGCCTGTAGTCCTTCTACAAAT
GAGGCTTCCGCAACCCTACAAAAACAAAATCCTTTT
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCCCCTTCTTTGCTCTGACTATC
TTTTCCTTCTCCTGGGAAGCCCTCTCCAGCACTGTCTGTCCTGTCTCCCA
GACTGGTTAGATACCTTTCTGGTTTCCCAAGACACTTTGGTTTTGTTTTT
TAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNTNTTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTTTNNNNNG
TNNNNTNNNNNTTNNTTTTTTTTTTTTTNNNNNTNGNGCNNTGGGTNNTG
GGTTTTGTTTTTTTTTTTCCTCCTTTATCTTTTGTGTTTTGCGTCCCCCT
TTTTTTTTTTTTTTTTTTCCCCCCCTTTCTTTTTTCCTTCTTTTCCTTTT
TCCCTTTTTTTTTCCTCTCTTTTTTTTTTTTCTTCCCTTTCTCTTTTTTT
TTTCCCTCGTTTTACCTCCTTTTCTTTTCCCTCTTTTTCTTTCTTTTTTC
TCTCTCCTTTTTTTCTATATTTTTCTCCTTCACTATTTTTTAGCAATTTT
TAATTATTTAATTCCTTTCCTTCTTTTCATATTTTTCTTTTTTTTTTCGC
TCTTTTGTGTCTTACTATTTATTCTTCCTTTTTCCTTTTTTTTTTTTTTT
TCACTTTTACCTCTTTTGTTTTTTTACCTTTTTTTTCTCCCCCCCCCCCC
CATTATTTCTCCTCTCTTTCCGCTTTTTTTTTATTATTTCCTCCCTCTTT
TTCTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_h09.g1 MSMg01no366_h09.g1 CHROMAT_FILE:
MSMg01no366_h09.g1 PHD_FILE: MSMg01no366_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:19 2005
         (164 letters)



>mm_chr3_108252565_108253128
          Length = 564

 Score =  263 bits (136), Expect = 4e-75
 Identities = 161/174 (92%), Gaps = 10/174 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttccccttctttgctctgactatcttttccttctcctgggaagccctctccagcactg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttccccttctttgctctgactagcttttccttctcctgggaagccctctccagcactg 260

                                                                       
Query: 61  tctgtcctgtctcccagactggttagatacctttctggtttcccaagacactttggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tctgtcctgtctcccagactggttagatacctttctggtttcctaagacactttggtttt 320

                                                                 
Query: 121 gtttttt--aaggtgtgtgtgt----gtgtgtgtgtgt----gtgtgtgtgtgt 164
            ||||||  |||||||||||||    ||||||||||||    ||||||||||||
Sbjct: 321 attttttttaaggtgtgtgtgtttatgtgtgtgtgtgtttatgtgtgtgtgtgt 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)