Query= MSMg01no366_k01.b1 MSMg01no366_k01.b1 CHROMAT_FILE:
MSMg01no366_k01.b1 PHD_FILE: MSMg01no366_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:32 2005
(252 letters)
>mm_chr3_152875914_152876565
Length = 652
Score = 468 bits (242), Expect = e-136
Identities = 248/250 (99%)
Strand = Plus / Plus
Query: 3 cgaaagaaaactgggtaatgttgagtgtctgatttctttctcgctcagtttcctggactt 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 203 cgaaagaaaactgggtaatgttgagtgtctgatttctttcttgctcagtttcctggactt 262
Query: 63 ccaacaccattgcttcaatggcttaggttttgagaagaagctgacattctgatggaccag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaacaccattgcttcaatggcttaggttttgagaagaagctgacattctgatggaccag 322
Query: 123 taactctctctaggtcagtcttggtgcactttggatgacagagttctttgtgtggcaatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taactctctctaggtcagtcttggtgcactttggatgacagagttctttgtgtggcaatg 382
Query: 183 gctgggcagccctgtgtagtttcacttctcatggtcacaggttttcttaagaaaacagta 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 gctgggcagccctgtgtagtttcacttctcatggtcacaggttttcttaagaaaacagca 442
Query: 243 gacacacaca 252
||||||||||
Sbjct: 443 gacacacaca 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no366_k01.g1 MSMg01no366_k01.g1 CHROMAT_FILE:
MSMg01no366_k01.g1 PHD_FILE: MSMg01no366_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:32 2005
(453 letters)
>mm_chr3_153049265_153050122
Length = 858
Score = 723 bits (374), Expect = 0.0
Identities = 395/404 (97%), Gaps = 5/404 (1%)
Strand = Plus / Minus
Query: 1 tcagcttgtgtcatggattgttacaattattg---tttttttttattattccattcaatt 57
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 404 tcagcttgtgtcatggattgttacaattattggtttttttttttattattccattcaatt 345
Query: 58 cttgctatcatatgagaag--aaaacaaataaacctttccccatagataacacatagtga 115
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 344 cttgctatcatatgagaagaaaaaaaaaataaacctttccccatagataacacatagtga 285
Query: 116 tattgtcctggcatctaggtaaataactgaataaaataatgttacatacatacctttgtg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tattgtcctggcatctaggtaaataactgaataaaataatgttacatacatacctttgtg 225
Query: 176 taagataacacagcaaccaaggggtccctgcctcccttccttcctttctgcctccctctc 235
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 224 taagataacacagcaaccaaggggtccctgtctcccttccttcctttctgcctccctctc 165
Query: 236 tccattctctcccctctcctctctccctgtctccttccctccctttcctttcccctcctc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tccattctctcccctctcctctctccctgtctccttccctccctttcctttcccctcctc 105
Query: 296 cttccccttctccccctctcctcccctctcttttccttcccttgcctttcctcatcccat 355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctttcccttctccccctctcctcccctctcttttccttcccttgcctttcctcatcccat 45
Query: 356 tttaagcgacactgcagatcaaacgcagagccttggtcgtggta 399
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 44 tttaagcgacactgcagatcaaacccagagccttggtcgtggta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 858
Length adjustment: 10
Effective length of query: 443
Effective length of database: 848
Effective search space: 375664
Effective search space used: 375664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
