Query= MSMg01no366_m14.b1 MSMg01no366_m14.b1 CHROMAT_FILE:
MSMg01no366_m14.b1 PHD_FILE: MSMg01no366_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:43 2005
(463 letters)
>mm_chr3_27482421_27483283
Length = 863
Score = 768 bits (397), Expect = 0.0
Identities = 438/452 (96%)
Strand = Plus / Plus
Query: 1 tagtctggaactcactgagatctgcctgccattgcctcgcaagtcctggaattaaaggtg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tagtctggaactcactgagatctgcctgccattgcctcgaaagtcctggaattaaaggtg 260
Query: 61 agtccccccacgcccggtgaggtctaattaatggtaatacatatagagggtttggccaag 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 261 agtccccccacgcccggtgaggtctacttaatggtaatacatatagagggtttggtcaag 320
Query: 121 catatctggatttatctttaggccaaaactcatcagtgttaatctaagagttataaaaat 180
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 catatctggatttatcttcaggccaaaactcatcagtgttaatctatgagttataaaaat 380
Query: 181 aacaaggtcttatatttttactaaggatcactgttgtttgtatcctgacacacttgagag 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 381 aacaaggtcttatatttttactaaggatcactgttgtttgtattctgacacacatgagag 440
Query: 241 aggtgagccttattatcaagtcatatattcaatcacttctgtaacctatgactgtcccac 300
|| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgagccacactatcgagtcatatattcaatcacttctgtaacctatgactgtcccac 500
Query: 301 tcaaacagtggcaaacacaaatagtcaatgtatatgtaaacaaagcaattactttactgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaacagtggcaaacacaaatagtcaatgtatatgtaaacaaagcaattactttactgt 560
Query: 361 ctgcatattatcagtgctggatacaaataaagaggccacatttttaatgtaacacatttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcatattatcagtgctggatacaaataaagaggccacatttttaatgtaacacatttc 620
Query: 421 catttcttaaggnattatatatatatatatat 452
|||||||||| | |||||||||||||||||||
Sbjct: 621 catttcttaaagtattatatatatatatatat 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_m14.g1 MSMg01no366_m14.g1 CHROMAT_FILE:
MSMg01no366_m14.g1 PHD_FILE: MSMg01no366_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:44 2005
(243 letters)
>mm_chr3_27659644_27660285
Length = 642
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%), Gaps = 1/243 (0%)
Strand = Plus / Minus
Query: 1 aggcatgcactgcagtgctccactttttatgggtgttagggatccaaactcagggcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aggcatgcactgcagtgctccactttttatgggtgttagggatccaaactcagggcctcg 483
Query: 61 tgattgtacagcaaatgctttactgcctaaggcacttccctgtccttttgtccttccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgattgtacagcaaatgctttactgcctaaggcacttccctgtccttttgtccttccctg 423
Query: 121 tccttaatttgtttggtttaggttttttttctttgtctcagagaatcttatgttttctat 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 422 tccttaatttgtttggtttagg-tttttttctttgtctcagagaatcttatgttttcaat 364
Query: 181 gaaatttaatcatatctacccctcattcccttctccaactgaccccacattaatcccaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaaatttaatcatatctacccctcattcccttctccaactgaccccacattaatcccaac 304
Query: 241 atg 243
|||
Sbjct: 303 atg 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
