BAC Information

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BAC

Clone NameMSMg01-366M15
Chromosome3 (Build37)
Map Location 95,612,752 - 95,613,068
singlet/doubletsinglet
Overlap gene4930535B03Rik
Upstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, LOC100043327
Downstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366M15.T7 (MSMg01no366_m15.b1)MSMg01-366M15.TJ (MSMg01no366_m15.g1)
ACCAG474418AG474419
length790779
length of high quality
(start - end)		249 (75 - 323)465 (76 - 540)
definitionCHROMAT_FILE: MSMg01no366_m15.b1 PHD_FILE: MSMg01no366_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:44 2005CHROMAT_FILE: MSMg01no366_m15.g1 PHD_FILE: MSMg01no366_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAGCTATCCCGAGGTACTTGGCAGTTTGAAACCCTATCTC
AGAAAACCAAAAGGGAGCCAGGTGTGCCATTTGTGGTGGTGCACTCATTA
AACCCCAGCACTCAAAGAGGCAGAAGCAAGCAGCTCTCTGAGAATTCTAG
ACCAGCCTAATGCGTGTACATAGTGAATTCCAGGACAGCCAGGACTACGT
AGAGAGACCTTGTCAAAACAAGGAGCAGGGGGAACAATAGGTTTTTAGTT
TTTTTGTTTTTCATTTTCTTCTGTTGTTCTTGTAACAATTTTTTAAGTTT
TTTTTTTATTTGTATGTACGTATCTGTAGAGATGGCTCAACCATTAAGAA
CACTGGCTGCTCTTCCAGACATCCTGAGTTCAATTTCCAGCAGTCAGATG
GTGGCTCACAACCATTTGTAATGTAATCTGTTACCCTATTCTGGTATGCA
GCTATACAGGTAGATAGAGTACTCATATAGATTAAATAAATACATCCTTT
TTTGTGGGGGGTAGGATTGTTATCCCCTTTTTTCTTTTTCCCTTTCCTTC
CTCCTACCCTCGATTCCCCTTTATTTTTACTTCCGTTCTTTTCTTTCGCA
ATAATAACCCTATTTCTTTTTTTTCTTCCTCTTTTCTCTTTAACCTTTAC
CCCCATCCCCTATTTCTTCTCCCTTTTTTTTTTTTTCTCCTGTTTTTATC
CCCTTCTTCCTTTTTTATTATCCCTTTTTTTTTTTTCCCG

NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAATTCAGGCTGGCCTCAA
ATTTAACAGCATTCTTCCTGTCTCAGCTTTCTGAATGCAGAATTTGAAAT
GCAGAGTCATGACACCTGCCAACAAGATTTACTTTTATAGTTATATATTC
ATTATAAGGAATGATAAATTTCATAAAAATCATTCCATACAGGGATATTG
CATAGTGTTGGATGGATTCGATCTGGGGTAAGGAGAGTAATTTGAAATGT
CTTTGAGTTTTGCCTCAGTGTATTACTAAGAATTAGTGGTTACTGGTGAA
GGTTGCAAATGGAACAGATTTTGAAAGATATATTAGAAATTTAGTTTTGA
ATATGTTAAATTTTTGGATGCCTGCTTTTTAAGATACCTTGAGATACAAT
TCATGGCTGTAAAATTCACCATTTGACCTTGTTTTAGTGCATTCACAGTA
ATGTTTAAAGTCACCATATTACCTGGGAAGTTGAGACATGAGGACTGTGA
ATTTGCAGCCAGCCCGGGCTACATACCAGAACAGAAAACATGCTTCATAT
ATTCTAGACCTAATAATTAAGTTTCATGCTTGGGCAGGGACTGATTATGA
ATAAGTGGTGGAATTCTCCCCCCGAAAATCCCTCCCCAAGGATGAAGGCA
AAAAAAAAAGGGGCTTCTTGTTTTTTAAAAACATGCGCCCAAACCTGAAA
AAATTATTTTTTTGTACCCCCCGACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_m15.g1 MSMg01no366_m15.g1 CHROMAT_FILE:
MSMg01no366_m15.g1 PHD_FILE: MSMg01no366_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:44 2005
         (465 letters)



>mm_chr3_95612204_95613068
          Length = 865

 Score =  569 bits (294), Expect = e-166
 Identities = 312/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 148 ataaaaatcattccatacagggatattgcatagtgttggatggattcgatctggggtaag 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ataaaaatcattccatacagggatattgcatagtgttggatggattcgatctggggtaag 806

                                                                       
Query: 208 gagagtaatttgaaatgtctttgagttttgcctcagtgtattactaagaattagtggtta 267
           |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 805 gagagtaatttgaaatgtctttgagttttgcctcagtg-actacaaagaattagtggtta 747

                                                                       
Query: 268 ctggtgaaggttgcaaatggaacagattttgaaagatatattagaaatttagttttgaat 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctggtgaaggttgcaaatggaacagattttgaaagatatattagaaatttagttttgaat 687

                                                                       
Query: 328 atgttaaatttttggatgcctgctttttaagataccttgagatacaattcatggctgtaa 387
           ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 686 atgttaaatttgtggatgtctgctttttaagatacctcgagatacaattcatggctgtaa 627

                                                                       
Query: 388 aattcaccatttgaccttgttttagtgcattcacagtaatgtttaaagtcaccatattac 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aattcaccatttgaccttgttttagtgcattcacagtaatgtttaaagtcaccatattac 567

                             
Query: 448 ctgggaagttgagacatg 465
           ||||||||||||||||||
Sbjct: 566 ctgggaagttgagacatg 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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