Query= MSMg01no367_a09.b1 MSMg01no367_a09.b1 CHROMAT_FILE:
MSMg01no367_a09.b1 PHD_FILE: MSMg01no367_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:03 2005
(548 letters)
>mm_chr3_40367369_40368317
Length = 949
Score = 648 bits (335), Expect = 0.0
Identities = 355/363 (97%), Gaps = 4/363 (1%)
Strand = Plus / Minus
Query: 13 gaattc-catgctgtactggttctattgggttgaaaaggagcagaagatggcatgtctat 71
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 363 gaattcacatgctgtactggttctatggggttgaaaaggagcagaagatggcatgtctat 304
Query: 72 agtccagtgtctcatagactgcttccctccctttgtttcctccttttcgccctctgctgc 131
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 303 agtccagtgtctcatagactgcttccctccccttgtttcctccttttcgccctctgctgc 244
Query: 132 cttctcttcttctgtcctctcttcaccctcggtcacagctagcttttctgtcgttgctgt 191
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 243 cttctcttcttctgtcctctcttcaccctcggtcacagctagcttttctgtcattgctgt 184
Query: 192 gacacaacactgtgaaggaacttggaga---aaagtcgatttggctcacagatgacagcc 248
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 183 gacacaacactgtgaaggaaattggagaggaaaagtcgatttggctcacagatgacagcc 124
Query: 249 aatgattgaaggaaagtcaagcaaggaagtccagtgtggcaggaacctggaggcaggaac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aatgattgaaggaaagtcaagcaaggaagtccagtgtggcaggaacctggaggcaggaac 64
Query: 309 ctggaggcaggaacctggaggcaggaaccaaagcagaggccatcgaggagcgctgcttat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctggaggcaggaacctggaggcaggaaccaaagcagaggccatcgaggagcgctgcttat 4
Query: 369 tgg 371
|||
Sbjct: 3 tgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space: 505182
Effective search space used: 505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_a09.g1 MSMg01no367_a09.g1 CHROMAT_FILE:
MSMg01no367_a09.g1 PHD_FILE: MSMg01no367_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:03 2005
(581 letters)
>mm_chr3_40229287_40230267
Length = 981
Score = 955 bits (494), Expect = 0.0
Identities = 551/582 (94%), Gaps = 20/582 (3%)
Strand = Plus / Plus
Query: 1 tctccctgtctttatttgcccaatcaaccatcacttattcttcagcagcagcagcagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tctccctgtctttatttgcccaatcaaccatcacttattcttcagcagcagcagcagcag 278
Query: 61 cagcagcagcagcagcagcagcagcagcagcagc-agcagcagcagcagcagcagcagta 119
||||||||| || | | || || || || || || || ||||
Sbjct: 279 cagcagcagtagta-------------------ctagtagtagtagtagtagtagtagta 319
Query: 120 gtagtagtagtagtagtagtagtagtagtagtaatggcccgtggctactgctgatgggtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtagtagtagtagtagtagtagtagtagtagtaatggcccgtggctactgctgatgggtg 379
Query: 180 tcttagaaccactggaacactctttaacaaacctaaatgcctctgctcttgtataataag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcttagaaccactggaacactctttaacaaacctaaatgcctctgctcttgtataataag 439
Query: 240 tcaggagaattctggtctttgaactatttatactttcaatgtaatgaattatataacaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaggagaattctggtctttgaactatttatactttcaatgtaatgaattatataacaca 499
Query: 300 taattttaaaggaaaaatagtggatgaaaaagcaaagaaagatatttaaagtaaaaatta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taattttaaaggaaaaatagtggatgaaaaagcaaagaaagatatttaaagtaaaaatta 559
Query: 360 catcatttgacttttataaatctaaataacagtaaattattttataacactactgaatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catcatttgacttttataaatctaaataacagtaaattattttataacactactgaatta 619
Query: 420 aagtattgcaaaaataactaaaatattggcaacaatactgagattctaaaaatatcatca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagtattgcaaaaataactaaaatattggcaacaatactgagattctaaaaatatcatca 679
Query: 480 ctcagactatttctgaaagtataaggccatgttttaacaaaactataaatccaagctcat 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctcagactatttctgaaagtgtaaggccatgttttaacaaaactataaatccaagctcat 739
Query: 540 gagtcattgctcatttataacacatgaaaggaaactttaaga 581
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 740 gagtcattgctcatttataacacgtgaaaggaaactttaaga 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
