Query= MSMg01no367_b03.b1 MSMg01no367_b03.b1 CHROMAT_FILE:
MSMg01no367_b03.b1 PHD_FILE: MSMg01no367_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:07 2005
(411 letters)
>mm_chr3_104992744_104993554
Length = 811
Score = 634 bits (328), Expect = 0.0
Identities = 331/332 (99%)
Strand = Plus / Minus
Query: 12 caggcacatttttaaaaaagataaccaggagaggaatttgttgtgaaaaatacatgaagt 71
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggcacattttttaaaaagataaccaggagaggaatttgttgtgaaaaatacatgaagt 445
Query: 72 ttttcacggtaaactaagcttctgctttctattgcagacccatggaccagaagagaagct 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttcacggtaaactaagcttctgctttctattgcagacccatggaccagaagagaagct 385
Query: 132 tggccacagccaggccttgcttgcttgacagaatgaagatctagttacttttatttttct 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggccacagccaggccttgcttgcttgacagaatgaagatctagttacttttatttttct 325
Query: 192 gttcctctcctaaaccagccttctcaccttccagggaagcaattctccacagccagttca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcctctcctaaaccagccttctcaccttccagggaagcaattctccacagccagttca 265
Query: 252 ccaacctctctatccaaaccagatccctgagcaaagccccaagcttcagtcagctctctc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaacctctctatccaaaccagatccctgagcaaagccccaagcttcagtcagctctctc 205
Query: 312 tctctctctctctctctctctctctctctctc 343
||||||||||||||||||||||||||||||||
Sbjct: 204 tctctctctctctctctctctctctctctctc 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_b03.g1 MSMg01no367_b03.g1 CHROMAT_FILE:
MSMg01no367_b03.g1 PHD_FILE: MSMg01no367_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:07 2005
(273 letters)
>mm_chr3_104870946_104871612
Length = 667
Score = 435 bits (225), Expect = e-126
Identities = 259/273 (94%), Gaps = 8/273 (2%)
Strand = Plus / Plus
Query: 1 cattatttctcctctttacctggagagggagaaaatataacttctaaacacggttttcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattatttctcctctttacctggagagggagaaaatataacttctaaacacggttttcc- 259
Query: 61 ttttttttctggcttccaagagagatacaccatcagataacagcacgtcc-acagctgaa 119
|||||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||
Sbjct: 260 ttttttttctggcttccaagagagatgcaccatcagataacagcatgtccga-agctgaa 318
Query: 120 catatctgcctgaaatacccactgctcccaggtatggtggtagccatgttgtcacagggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 319 catatctgcctgaaatacccactgctcccaggtatggtggtagccatgttgccacagggg 378
Query: 180 aggggaggggagggagaaagccacttatgtgccattcagagatgtgcattaacttcgttc 239
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 379 aggggaggg-----agaaagccacttatgtgccattcagagatgtgcatcaactttgttc 433
Query: 240 tcaccctttctccgggaaatggctgaaggtggc 272
|||||||||||||||||||||||| ||||||||
Sbjct: 434 tcaccctttctccgggaaatggctaaaggtggc 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 667
Length adjustment: 9
Effective length of query: 264
Effective length of database: 658
Effective search space: 173712
Effective search space used: 173712
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
