Query= MSMg01no367_h08.b1 MSMg01no367_h08.b1 CHROMAT_FILE:
MSMg01no367_h08.b1 PHD_FILE: MSMg01no367_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:38 2005
(497 letters)
>mm_chr3_121138843_121139739
Length = 897
Score = 841 bits (435), Expect = 0.0
Identities = 483/503 (96%), Gaps = 9/503 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaaggatatctatggctacataataagtttcaaggccgatctgggctacgtgag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattcaaggatatctatggctacataataagtttcaaggccgatctgggctacgtgag 254
Query: 64 acactgtcctgagaaaccagacaa-gggcggggggggg------ctggggagatggctca 116
|| ||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||
Sbjct: 255 accctgtcctgagaaaccagacaacgggggggggggggggggagctgaggagatggctca 314
Query: 117 ttggtaaag--tgtttgctgtcctgaagtctggagctccggatcgtcttagtccccatgt 174
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 ttggtaaagagtgtttgctgtcctgaagtctggagctccggatcatcttagtccccatgt 374
Query: 175 gacaatgcctgactgtaaccccagcacgaggaaggcagatgcagaagcgtctctgtggca 234
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 375 gacaatgcctgactgtaaccccagcacgaggaaggcagatgcagaagcctctctgtgaca 434
Query: 235 tgctgggtccaggttcagagagagaccctgcctcaaaggaatatgtggcaagtgatagag 294
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 tgctgggtccaggttcagagagagaccctgcctcaaaggaataggtggcaagtgatagag 494
Query: 295 aggacaccggatgccctttcccctggtcactgtgtgtacgtacacaggtgcacacacaca 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggacacccgatgccctttcccctggtcactgtgtgtacgtacacaggtgcacacacaca 554
Query: 355 tatacccactcttggaccatccatacctaaataaataaagctcaaaagaaatacagccag 414
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tatacccattcttggaccatccatacctaaataaataaagctcaaaagaaatacagccag 614
Query: 415 acaagcaacaaccagccaaccaaagctgcaggagacccctgctggggatcagggcacatg 474
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 615 acaagcaacaaccagccaaccaaagctgcaggagtgccctgctggggatcagggcacatg 674
Query: 475 ctttaattctttattatcatacg 497
|||||||||||||||||||||||
Sbjct: 675 ctttaattctttattatcatacg 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_h08.g1 MSMg01no367_h08.g1 CHROMAT_FILE:
MSMg01no367_h08.g1 PHD_FILE: MSMg01no367_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:38 2005
(449 letters)
>mm_chr3_121267888_121268736
Length = 849
Score = 333 bits (172), Expect = 2e-95
Identities = 251/282 (89%), Gaps = 16/282 (5%)
Strand = Plus / Minus
Query: 1 ctcattctttgctgggctcagactcctgatgttctaggcaggatttcactctgggcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctcattctttgctgggctcagactcctgatgttctaggcaggatttcactctgggcttcc 252
Query: 61 ctttctacaaagaatggaagaaaaagtaacttgttttaaaaactgggaac-agggctggt 119
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 251 ctttctacaaagaatggaagaaaaagtaacttgttttaaaaactgggaacaagggctgga 192
Query: 120 gagatggctcagtgggtaagagcacccgactgctcttcc-gaaggtcc-gaagttcaaat 177
|| ||||||| |||| ||| ||||||| |||| | |||||| | ||||||| |
Sbjct: 191 gaaatggctctgtggttaa--------gactgcttttccag-aggtcctg-agttcaatt 142
Query: 178 cccagcaaccacatggtggctcacaaccatccgtaatgagatctgact-ccctcttctgg 236
|| |||||||||||||||||||||||||||| ||||| ||||||| | |||||||||||
Sbjct: 141 cctagcaaccacatggtggctcacaaccatctataatgggatctga-tgccctcttctgg 83
Query: 237 agtgtctgaagacagctacagtgtacttatatataat-aaaa 277
|||| |||||||||||||| |||||| ||||| ||| ||||
Sbjct: 82 tgtgtttgaagacagctacaatgtactcatataaaatcaaaa 41
Score = 271 bits (140), Expect = 7e-77
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 306 aaaaactgggaacaagggctggagaaatggctctgtggttaagactgctcttccagaggt 365
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 214 aaaaactgggaacaagggctggagaaatggctctgtggttaagactgcttttccagaggt 155
Query: 366 cctgagttcaattcctagcaaccacatggtggctcacaaccatctataatgggatctgat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cctgagttcaattcctagcaaccacatggtggctcacaaccatctataatgggatctgat 95
Query: 426 gccctcttctggtgtgtttgaaga 449
||||||||||||||||||||||||
Sbjct: 94 gccctcttctggtgtgtttgaaga 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
