BAC Information

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BAC

Clone NameMSMg01-367L01
Chromosome3 (Build37)
Map Location 22,518,785 - 22,519,178
singlet/doubletsinglet
Overlap genenone
Upstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
Downstream geneLOC100040378, LOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367L01.T7 (MSMg01no367_l01.b1)MSMg01-367L01.TJ (MSMg01no367_l01.g1)
ACCAG475098AG475099
length843799
length of high quality
(start - end)
154 (49 - 202)395 (81 - 475)
definitionCHROMAT_FILE: MSMg01no367_l01.b1 PHD_FILE: MSMg01no367_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:55 2005CHROMAT_FILE: MSMg01no367_l01.g1 PHD_FILE: MSMg01no367_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCAGTTCCCAACCTGATCCTGGGCTTTTTGTTTGTTTGTTT
TGGGATTTTTTTGTTGTTCTTGTTGTTTGAGAGGTTTACAATGATTCTAT
TTCCTTAGGATTTATGGAGATTTTTAGATGGCTTTCCTGATCTTGATCTT
GCTATCTGCCTATAACATGATCCATTTCCAACTCTGTACAGTATAGGCTT
TTGTATCAAGATCTGACATTTTGTGTTTTTGTTTCTCGTTCTCTTCCCCT
TTTCCCCCCTTCCTCCTCCTCTTTTGCTCCTTCTCCCTTTCCTCTTTCCT
TTCTTTTTTCTTCCTTTCTCCTCCCCTCCTTCTCCTTCCCTTTCCCTCTT
TTCTTCCCTCTTTTTCCCTCCCCCCTCTTTCTCCCCCCCCCCCCTCCTTT
TCCCTCCCCTTCCCTTTCCTCCTTTCCTTCCCTTCCCCCCTTTTTCCTTC
TTTTTTTCCCCCCCTTTTCCTCCCTTTTCCCTCTCCCTCCCTTCCCCCTT
CCCTTCCCCTTTTTCTTTCCCCTTTCCTTTCTCTTTTTTTTTTCCCCCCT
TCTTTTCCTCCTTTTTTCCTTCTCCCTCCCTTCCCTTCTCTTCTCTCCCT
CCCTCTTTTTTTCCCCTCCTTTCTCCCCCCCTTTTTTCTCCCTCTTTTCC
CCCCCTTTTCATTTTCTTCTTTCTTTTTCCCCCCCTCCCTTTTTTTCCCC
CCCTTCTTTTTTTCCTTCCCCCCTTTTTTTCTTCCTCCTCCCCCCTCCCC
CCTTTTTTTCTTTTTTCCTTTCCCTCCTTTTCTTTTCCCCCTG
CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCGTAGGAAGTTGAACAAG
AAACTAGGAAAGAGCACTGCTTACTGGCTTGCTCTCAATGACTCATGCTC
AGTTAGGTTTTTTTTAATACATATAAAAACTACCTGTTTAGGAATCGCTT
GCCAATTGTGGGTTGGGCCCTCCTATATCAAGAAGCAATCAAGAAAATGC
ACTAAGGATATGATGTATCAGATAGATTCAGTTTCTCAATTAATATTCAT
TTTCCAGGTAACTCCCGTCAGTGACAAATGGACAATAAAACCTTACCAAT
ATAGCAGAGTAGTCCTGGCGTGCATGCTTTCTCCTTGCTTTTTAGAAAGG
AAGCAGGAAAACATTGATCCCTTGAGAATCACTTTCAGGTCTTGCCAATT
CTCTGACTGTAAGCAGATTTCTCAGACCAAAGCATGTTATACCATCTCCT
TCTTTGCCGGTACGTTTATCTTTCTGACTTTGTGCCTCCTTTTCCTTGAA
CTGTATTCTCCGCTCTGCTGCTTTCTTTCGCTTTTCCTCCTACACTTTTT
TGCAATTCCTCTCAAACTTCACTCTCTTTTTATTTTATTTTACTTTTTTT
CCGCTTCCTCCCTCCCATCTCTTATGTTTTACAATCCTCTCCCCACGAAT
TTTGTTCATCCTTTTCCCTCATATATCTTCCTCTGATTATACCTATTTCT
TTCTTTATTCTACTTTTCTCTATTTCTCTTATGGCTGCGATCCTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_l01.g1 MSMg01no367_l01.g1 CHROMAT_FILE:
MSMg01no367_l01.g1 PHD_FILE: MSMg01no367_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:56 2005
         (395 letters)



>mm_chr3_22518584_22519378
          Length = 795

 Score =  733 bits (379), Expect = 0.0
 Identities = 391/395 (98%), Gaps = 1/395 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgtaggaagttgaacaagaaactaggaaagagcactgcttactggcttgctctcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agcgtaggaagttgaacaagaaactaggaaagagcactgcttactggcttgctctcaatg 261

                                                                       
Query: 61  actcatgctcagttaggttttttttaatacatataaaaactacctgtttaggaatcgctt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 actcatgctcagttaggttttttt-aatacatataaaaactacctgtttaggaatcgctt 320

                                                                       
Query: 121 gccaattgtgggttgggccctcctatatcaagaagcaatcaagaaaatgcactaaggata 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaattatgggttgggccctcctatatcaagaagcaatcaagaaaatgcactaaggata 380

                                                                       
Query: 181 tgatgtatcagatagattcagtttctcaattaatattcattttccaggtaactcccgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtatcagatagattcagtttctcaattaatattcattttccaggtaactcccgtca 440

                                                                       
Query: 241 gtgacaaatggacaataaaaccttaccaatatagcagagtagtcctggcgtgcatgcttt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgacaaatggacaataaaacctaaccaatatagcagagtagtcctggcgtgcatgcttt 500

                                                                       
Query: 301 ctccttgctttttagaaaggaagcaggaaaacattgatcccttgagaatcactttcaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccttgctttttagaaaggaagcaggaaaacattgatcccttgagaatcactttcaggt 560

                                              
Query: 361 cttgccaattctctgactgtaagcagatttctcag 395
           ||||||||||||||||||||||| |||||||||||
Sbjct: 561 cttgccaattctctgactgtaagtagatttctcag 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)