BAC Information

Click to search

BAC

Clone NameMSMg01-367M14
Chromosome3 (Build37)
Map Location 112,196,678 - 112,197,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367M14.T7 (MSMg01no367_m14.b1)MSMg01-367M14.TJ (MSMg01no367_m14.g1)
ACCAG475172AG475173
length764745
length of high quality
(start - end)		519 (51 - 569)453 (58 - 510)
definitionCHROMAT_FILE: MSMg01no367_m14.b1 PHD_FILE: MSMg01no367_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:03 2005CHROMAT_FILE: MSMg01no367_m14.g1 PHD_FILE: MSMg01no367_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCAAATAATGGGTAAAACAGAGTTCCCACTGGCTGTTTC
CTGTTAACAAATGGACCTTCCAGTACTGAGACAGGGTTACATCCAATTGA
GCCATTAGCCAAAGTTTTCCCATGGAAATACCAAAGCAACGAAGGCCAAG
GTAATAAGTTGCTTTTCACAAATGGATAGTGAAGCCCCATTGCTAGAGAC
AGCATGCTCATTAATCACTGAATATGAAGCAGACAAACTATTGCATACAT
AGGACCTTCAACCCTATTTTCTAGTCTTTAGCATGGTAACTTATACAACA
ACACAGCTACATTCTTTTTAATATACAATGTTGTCCAGCCTGCAAGATAC
GCTAATGGAATGGAGACACAAAATGTGTGTGAGAGGATAGCCAATCAACA
TCTGATTTGAGTTAAGACACACTTCATGAGACTGAACCCAAACCTGGCAG
TGCTTGGGTAACCAGGAACCTGAAACTAGATAGCTCAGGGAACAATGATA
AAACAAAATTCTACTGGCCTTAAAACAAACAAACAAAAAAGGGGTTATAA
AATGATTACTAACAGTAATCTGCTACTCTTGTAGGCCTTGCTTTATTCAG
TCATCACCAGAATAAGTTTCCTCATTCAGCAGATAAGAACCCTCCTTGAA
ACCCCCCGGTTAGAATTACACCCCCAAGAGTAAGTTCTTTAAGGGATTGG
CTTCCTTAAAACCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGAAATCAATACATGGATAAAAATATAATATTGAATCATCAA
ATTTATGTAAAATATATGTATCATTTGTATTGGTGTCACTCTAGTCATCT
GACTAAAAGGTTTAAAACTCACCACATTTGTTTTAAATGAAAGATTTAAT
ACACATTTTCAATGCAATGCACTTACAAATCTATAATAAAGTCATATGTT
TTTTTCTAAATACTAGCCAATATATACTTACAATTCATTTTAATATCTAT
TTATGTTGATTCCTACATATTCTTAAGATGAGAGTATGTCATCAGGAAAG
CGAAAGAAATACAAATTTGTTTTATGTGTGCATATATATATACATACATA
CATACATACATATATATATATATATATATATATATATATATATATATATA
TATATATATATATGTATGTATATATATATATATATATATATATATATATA
TATATATATATTTTTTTTTGTGTTTTNGTTTAGGGNGTTTTTTTTTTGNG
TGTGTGTGTGTATTTATATATATATATATATATATATATATAATGTGTGT
ATTGTTTTTTTTATTTATAAATAATAAAAATATNTTATTTTTTTTTTGTT
TTTGGGAGAGGTGAAAGTGGTTTTTTATTTTTTAATTAANATAAGTGTGG
GGTGTGTTGTAAGTTTNGATGTTGGAGAGTGAGATAAAATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_m14.g1 MSMg01no367_m14.g1 CHROMAT_FILE:
MSMg01no367_m14.g1 PHD_FILE: MSMg01no367_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:03 2005
         (453 letters)



>mm_chr3_112196516_112197368
          Length = 853

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaatcaatacatggataaaaatataatattgaatcatcaaatttatgtaaaatatat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 524 atgaaatcaatacatggataaagatataatattgaatcatcaaatttatgtaaaatatat 465

                                                                       
Query: 61  gtatcatttgtattggtgtcactctagtcatctgactaaaaggtttaaaactcaccacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtatcatttgtattggtgtcactctagtcatctgactaaaaggtttaaaactcaccacat 405

                                                                       
Query: 121 ttgttttaaatgaaagatttaatacacattttcaatgcaatgcacttacaaatctataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgttttaaatgaaagatttaatacacattttcaatgcaatgcacttacaaatctataat 345

                                                                       
Query: 181 aaagtcatatgtttttttctaaatactagccaatatatacttacaattcattttaatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 344 aaagtcatatgtttttttctaaatactagccaatatatacttacaattcattttaatatt 285

                                                                       
Query: 241 tatttatgttgattcctacatattcttaagatgagagtatgtcatcaggaaagcgaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tatttatgttgattcctacatattcttaagatgagagtatgtcatcaggaaagcgaaaga 225

                                                                       
Query: 301 aatacaaatttgttttatgtgtgcatatatatatacatacatacatacatacatatatat 360
           ||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||
Sbjct: 224 aatacaaatttgttttatgtgtgcatatatatatacataca-a-atatatatatatatat 167

               
Query: 361 atat 364
           ||||
Sbjct: 166 atat 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 190
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |