BAC Information

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BAC

Clone NameMSMg01-368A05
Chromosome3 (Build37)
Map Location 87,856,228 - 87,856,824
singlet/doubletsinglet
Overlap geneGpatc4
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2
Downstream geneApoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368A05.T7 (MSMg01no368_a05.b1)MSMg01-368A05.TJ (MSMg01no368_a05.g1)
ACCAG475343AG475344
length741741
length of high quality
(start - end)		601 (38 - 638)527 (74 - 600)
definitionCHROMAT_FILE: MSMg01no368_a05.b1 PHD_FILE: MSMg01no368_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:20 2005CHROMAT_FILE: MSMg01no368_a05.g1 PHD_FILE: MSMg01no368_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCCAA
ACATCTCCCAATCGAAGAAACTACTTGATGCTGGCAAAACCACACCCTTG
CTAAAGCATGAGGCAAATCATAGTCAGCTGCTGACTGCAATCTGAAGCAG
CCCCCCATATCCCACACCTGAGATGAAAACAAAAACATATGTCCATATTT
CTGTGTTTTTCAAAGAAACTGAAGTTCTCATTACATAATACGATGTGTTT
TAGAGAGAACCCTATGGATGCTTTGAAGGTCACTGACTGTGGTGGAAGGT
GAGGATAGAGGCAGAGGCTCTTAAAGAGGCAAGGACTGCCCGAACCGAGT
AGATGTCAAGATGTAGAAACTGGGAGGGGATGCTGTGTGAAGCCCTGCAC
ACAGAATCTGTGCTACTAACTGCCGGCTTCTGTTCTTTTTGCCTTTACTC
ATCAGCTGTGGGCTCTTCTGAAAACCATTTTTACTCTTTGGTTCACATAT
GTAAAATAAGGGTGGACCAGGCAACCTCACAGGACTCTCCTGGCTTCTAA
CTCTTTTAAAATTATACATCAACATATCCCACCCCAGCAGCTCCTAACTA
AATGACAGCCCTCCCTCTCACTGTACGCTGCTGCTTCCCCAGCAGATGGG
ATTGTCCATGAACCTTAACATTTCCGTCTGGGGGAGGGCACGGGCACAGC
AAGGCTGGTCACGGGATCTCCGTATACTGGGGTATCCTGGG

CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCAAAA
TTCATCCACAGAGATCTGTTTGCCTCTGCCTCTTTTGGGATTAAAAGTAA
GAGCCACCCTACACAACCTTCTGAGAATGTAGGTATCGAAATCTTCTTCA
GGGCTGATCCATACTTTGACTTTATAAGCACCAGTACTAGGTTTGGGGTT
GCAGCTTGGTTACTGGAGTGCCTTGGGCACTAGGACCTAATTCTCCGCCT
TGAATTTTAAAACCTTGCATGGTGGTACATGCAGGTTAGTAATCTCAGCA
CTCAGGAGGTAGAGACAGGAAGATCATAAATTCAAGGTCATCCTAGGCTT
CACAGTAATTCTGAGGCCTGCTGGGGGCTACATGAGACCCTGCCTCGAAG
AAAGGGGTGGGGAAGAGGATGCCATGAATATTATGTAATATAAAATGGAA
GAAGTATGATTAGAGCTATTTCTGANATTCTCAAGACCTAGAGAAGGCTC
CACAGTTAAAAGCATCTGTTGGGCCGGGCAGTGGTGGCACACGCCTTTTA
TCCCAGCACTTGGGAGGCAGAGGTAGGAGGATTTCTGAGTTTGAGGGCAG
CCTGATCTACTAAGTGAGTTCCAGGACAGCCAGGGGTATACTGAGAAACC
TTGTCTCGGAAACCAATCAAACCTAATCTAAAAAACTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_a05.b1 MSMg01no368_a05.b1 CHROMAT_FILE:
MSMg01no368_a05.b1 PHD_FILE: MSMg01no368_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:20 2005
         (601 letters)



>mm_chr3_87856052_87857052
          Length = 1001

 Score = 1102 bits (570), Expect = 0.0
 Identities = 591/598 (98%), Gaps = 2/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaacatctcccaatcgaagaaactacttgatgctggcaaaaccacacccttgc 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaattccaaacatcacagaatcgaagaaactacttgatgctggcaaaaccacacccttgc 714

                                                                       
Query: 65  taaagcatgaggcaaatcatagtcagctgctgactgcaatctgaagcagccccccatatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 taaagcatgaggcaaatcatagtcagctgctgactgcaatctgaagcagccccccatatc 654

                                                                       
Query: 125 ccacacctgagatgaaaacaaaaacatatgtccatatttctgtgtttttcaaagaaactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccacacctgagatgaaaacaaaaacatatgtccatatttctgtgtttttcaaagaaactg 594

                                                                       
Query: 185 aagttctcattacataatacgatgtgttttagagagaaccctatggatgctttgaaggtc 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagttcttattacataatacgatgtgttttagagagaaccctatggatgctttgaaggtc 534

                                                                       
Query: 245 actgactgtggtggaag-gtgaggatagaggcagaggctcttaaagaggcaaggactgcc 303
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actgactgtggtgg-agagtgaggatagaggcagaggctcttaaagaggcaaggactgcc 475

                                                                       
Query: 304 cgaaccgagtagatgtcaagatgtagaaactgggaggggatgctgtgtgaagccctgcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cgaaccgagtagatgtcaagatgtagaaactgggaggggatgctgtgtgaagccctgcac 415

                                                                       
Query: 364 acagaatctgtgctactaactgccggcttctgttctttttgcctttactcatcagctgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 414 acagaatctgtgctactaactgccggcttctgttctttttgcctttattcatcagctgtg 355

                                                                       
Query: 424 ggctcttctgaaaaccatttttactctttggttcacatatgtaaaataagggtggaccag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggctcttctgaaaaccatttttactctttggttcacatatgtaaaataagggtggaccag 295

                                                                       
Query: 484 gcaacctcacaggactctcctggcttctaactcttttaaaattatacatcaacatatccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gcaacctcacaggactctcctggcttctaactcttttaaaattatacatcaacatatccc 235

                                                                     
Query: 544 accccagcagctcctaactaaatgacagccctccctctcactgtacgctgctgcttcc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 accccagcagctcctaactaaatgacagccctccctctcactgtacgctgctgcttcc 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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